Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38185 323 / 9e-106 RING/U-box superfamily protein (.1.2.3.4) AT5G01450 320 / 9e-105 RING/U-box superfamily protein (.1) AT2G38220 258 / 3e-81 RING/U-box superfamily protein (.1) AT2G38195 254 / 1e-79 RING/U-box superfamily protein (.1.2) AT4G24204 76 / 4e-16 RING/U-box superfamily protein (.1.2.3) AT3G23280 59 / 5e-09 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT4G14365 57 / 1e-08 XBAT34 XB3 ortholog 4 in Arabidopsis thaliana (.1) AT1G59560 52 / 5e-07 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT4G39050 51 / 2e-06 Kinesin motor family protein (.1) AT3G53410 50 / 3e-06 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004813 [exp] 788 / 0 AT2G38185 309 / 2e-100 RING/U-box superfamily protein (.1.2.3.4) Lus10010392 [exp] 66 / 4e-12 AT4G24204 86 / 7e-22 RING/U-box superfamily protein (.1.2.3) Lus10003551 [exp] 58 / 3e-09 AT3G23280 115 / 5e-30 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10009035 [exp] 58 / 9e-09 AT3G23280 524 / 0.0 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10008163 [exp] 56 / 4e-08 AT1G63900 533 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10009674 [exp] 56 / 6e-08 AT3G23280 499 / 6e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10027994 [exp] 52 / 6e-07 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10017969 [exp] 50 / 4e-06 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10035335 [exp] 46 / 5e-06 AT4G22250 114 / 4e-33 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G116300 [exp] 464 / 1e-160 AT5G01450 348 / 3e-116 RING/U-box superfamily protein (.1) Potri.006G100400 [exp] 458 / 2e-158 AT2G38185 341 / 2e-113 RING/U-box superfamily protein (.1.2.3.4) Potri.001G251900 [exp] 365 / 7e-122 AT5G01450 327 / 7e-108 RING/U-box superfamily protein (.1) Potri.014G020900 [exp] 149 / 6e-40 AT5G01450 116 / 9e-29 RING/U-box superfamily protein (.1) Potri.007G050500 [exp] 72 / 1e-14 AT4G24204 81 / 4e-20 RING/U-box superfamily protein (.1.2.3) Potri.005G225300 [exp] 59 / 5e-09 AT3G23280 355 / 2e-118 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.014G138000 [exp] 56 / 3e-08 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Potri.018G011300 [exp] 55 / 3e-08 AT3G23280 105 / 6e-26 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.010G070750 [exp] 56 / 4e-08 AT3G23280 425 / 4e-146 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.010G030600 [exp] 52 / 4e-07 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002487 pacid=23170153 polypeptide=Lus10002487 locus=Lus10002487.g ID=Lus10002487.BGIv1.0 annot-version=v1.0 ATGGACGAAGACTCACATCACACTCCACCTCCTCCCTCCTCTCCGTCTTCTCATTCCGCAATCGACGTCGACGACGGAGGTTCCCCGTCTAACTCCGATT CTGGAAGGGACGGTGAGTCATCTTCTTCTTCGCAAGTCCGGGAGGAACACGAGGATCCTGAGCACGGCAGCGAGCATCACTACCATCGTTTTCCGGAGCC GGAGATCGAGCAGCAGCGTCAGTATCATCAACAACAAGAGGTTGGCGTCTCCGATCTAAGAAGGAACTCGCCTGATGCCAGTGGTCTTTCGTCGCTTGGA GATGACACTTGGTCTTGTGTCACTGTCATCCTCACCTTTTGGTTATTCGTTTCGATGACTTTGATATTTGGAGTATATGGTCCGGAGAGTCTCAAGTTGG GACCGAATTGCTCACTTCTTATCCGACCTAATCCCTTATTCGTGCAGACTGTAAATGTGGAGGAGTTGAATGATTCCAACCCTGGTCTAATGCTCTATGG ATTTTATAAACCTCCTTCACTCGATCAGATAGAAACATGGTCGGACAAGCGCAAGAGAAGTGTTCCATATAATTCTCACGAGGCAAGTTTGTTCTTTATG TCAAATTACCTGTTATACTTGAGTGAGTGGATTTATCACCTGAATGAGGGCTCAGAGATTAATATTTCATACAGTGTGAATTCCTCAACCTCTTCTGTTA TCCTTGTAATTGCCCAAGGTGAAGAAGGCTTCGACCAGTGGCTGGATCAGCCTGCATATCCTAATTCTACTCTATCATGGCACATTATCCATGGAAGTGG TACTATCTACCAGAGGATAAGCAGATCTTCTTTCTACTATGTCGCTCTTGGCAACGTGTACTCCGAGACAGTGCAGGTGCAGTTGAAAATCAAAATAAGA GCTTTGCTGTATGACACAAGTGGAGCTTATTACAAGTGCTCATTCCCAGATGGGGTGTGTAGTTTACCTGTGTCATTCCTCAACGATAATCCTGTAGTTT TAACAACGCCTGGTACAAAACAGGCATCGATTGGAGAAGAATGGTACGTTAAAGTGTCCTATGGACCACGATGGGCATTATATATACTCGGTATTGCTGC ATTATCGATCCTCATGCTGGTGGCCTTAAACCTCTTAAACAAGTTCCGATGCATGAATGGAGAAAGCAGCGGTGCTGGGGGAACAAGAGCCCCTCTGCTT TCAAATAAAGAAGATGACCTCTCAAGTTGGGGGTCTTCTTACGAATCTGTGTCCAACGACGAGGAAAACAATCTTGAAGAACTTATGAGAGCAGGTCGTC ATCGAGAAGGGAAATCAGCGAGGGATGGTGATGATAGCAGCTATACACGGCGACTTTGCGCCATCTGTTTTGATGCCCCGAGAGATTGCTTCTTCCTCCC GTGTGGTCACTGCGTCGCTTGTTTTGCTTGCGGAACTAGGATCTCTGAGGTCTCTGGTACATGCCCGATTTGCCGTCGGCACATGAAGAAGGTGAAGAAG ATTTATAGCGTTTGA
AA sequence Show only first row Show all	>Lus10002487 pacid=23170153 polypeptide=Lus10002487 locus=Lus10002487.g ID=Lus10002487.BGIv1.0 annot-version=v1.0 MDEDSHHTPPPPSSPSSHSAIDVDDGGSPSNSDSGRDGESSSSSQVREEHEDPEHGSEHHYHRFPEPEIEQQRQYHQQQEVGVSDLRRNSPDASGLSSLG DDTWSCVTVILTFWLFVSMTLIFGVYGPESLKLGPNCSLLIRPNPLFVQTVNVEELNDSNPGLMLYGFYKPPSLDQIETWSDKRKRSVPYNSHEASLFFM SNYLLYLSEWIYHLNEGSEINISYSVNSSTSSVILVIAQGEEGFDQWLDQPAYPNSTLSWHIIHGSGTIYQRISRSSFYYVALGNVYSETVQVQLKIKIR ALLYDTSGAYYKCSFPDGVCSLPVSFLNDNPVVLTTPGTKQASIGEEWYVKVSYGPRWALYILGIAALSILMLVALNLLNKFRCMNGESSGAGGTRAPLL SNKEDDLSSWGSSYESVSNDEENNLEELMRAGRHREGKSARDGDDSSYTRRLCAICFDAPRDCFFLPCGHCVACFACGTRISEVSGTCPICRRHMKKVKK IYSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01450			RING/U-box superfamily protein...		Lus10002487 [exp]	0	1
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	1.0	0.9154
AT3G45620			Transducin/WD40 repeat-like su...		Lus10033290 [exp]	1.4	0.8933
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10024801 [exp]	2.0	0.8770
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Lus10013052 [exp]	3.5	0.8642
AT5G61670			unknown protein		Lus10016713 [exp]	4.2	0.8814
AT3G14460			LRR and NB-ARC domains-contain...		Lus10026132 [exp]	4.2	0.8721
AT5G22850			Eukaryotic aspartyl protease f...		Lus10021397 [exp]	5.1	0.8640
AT2G33590			NAD(P)-binding Rossmann-fold s...		Lus10024138 [exp]	7.3	0.8755
AT3G14205			Phosphoinositide phosphatase f...		Lus10013184 [exp]	7.4	0.8762
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039479 [exp]	7.5	0.8554

Compare expression of checked genes

Lus10002487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.