Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01460 276 / 2e-89 LMBR1-like membrane protein (.1) AT3G08930 276 / 3e-89 LMBR1-like membrane protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027794 [exp] 298 / 5e-98 AT5G01460 921 / 0.0 LMBR1-like membrane protein (.1) Lus10035505 [exp] 297 / 2e-97 AT5G01460 917 / 0.0 LMBR1-like membrane protein (.1) Lus10004814 [exp] 246 / 2e-78 AT5G01460 797 / 0.0 LMBR1-like membrane protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G100200 [exp] 267 / 6e-86 AT5G01460 825 / 0.0 LMBR1-like membrane protein (.1) Potri.016G116200 [exp] 264 / 8e-85 AT5G01460 848 / 0.0 LMBR1-like membrane protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04791 [flax] [poplar] LMBR1 LMBR1-like membrane protein
Representative CDS sequence Show only first row Show all	>Lus10002488 pacid=23170165 polypeptide=Lus10002488 locus=Lus10002488.g ID=Lus10002488.BGIv1.0 annot-version=v1.0 ATGTGCGATTTCAATCTCGCCCTAGTAATCGTCGCCATAGTGGTGTGCGTCATCGTCTTCATCTTCAATGTATACTTCCTGGTCAATTATCAGCACCCGG ACGACAAAAACCAAGCTTACTTCCCCAAGGTCGTGGTCGTTTTCGGCCTTTCCATCGCCGTCATTTCCATTCTGATACTGCCGGCTGACGTGGCGAACCG GCAAGCCTGTCGCCACGCGATATACAATGGCGCCTGTAATCTGACTTTGCCGATGAAGGATCTTTGGATGGCTGTCTATATCATTGACGCTGTACTAGTG TTCTTCATCATCCCGTTCGCTATGTTCTACTATGAAGGTGACCAGGACAAGACTGTTGGCAAGCGAGTTAAGAGCGCACTTAAGTGGGTGATAGCTACAG CCATTGTTTGCGCTCTTCTGCTGGGCATCTTATATGGGCTAGTTGGAAAGGTGGATTTCACTGTTAGGCATCTCACCTCAACCACAACGAACTTTCCAAC TTCATGGGATCTCTCCATGAGTCAACCATTTATTCTACGCTGTATATTGATTATAGCTTCCTTCCTAGGTCTTCTTGGTACTGTAGCATTTGCTTTCTTC TGCTTTTACCTTCTCCTTGCTGTGGTGGCTGGTGCAACGATGCTGGGCCTCAGAATAGTGTTCATTACAATTCATCCCATGAAGTGGGGAGCAACCCTCA TGAACTCATTTCTTTTCAACGTCGGACTCATTCTCCTGTGCTCCATTAGTGTAATTCAGTTTTGTGCCACAGCATTTGGCTATTATGCACAAGCAACTGC AGCTCAAGAAATTTTTGGTCACACGTTACAGTCTCTTCGTGGGATAAAGTATCTATACAAGTACAATGTGTTCCAAATAGCATTCATTGCTCTTGCGGGC TTGACTTTTGTTTATTATGCCGCCTTCGGATGGAAAAGGAAAAAACTAACTGGCAGGTTCCAACTATCAAGCTAA
AA sequence Show only first row Show all	>Lus10002488 pacid=23170165 polypeptide=Lus10002488 locus=Lus10002488.g ID=Lus10002488.BGIv1.0 annot-version=v1.0 MCDFNLALVIVAIVVCVIVFIFNVYFLVNYQHPDDKNQAYFPKVVVVFGLSIAVISILILPADVANRQACRHAIYNGACNLTLPMKDLWMAVYIIDAVLV FFIIPFAMFYYEGDQDKTVGKRVKSALKWVIATAIVCALLLGILYGLVGKVDFTVRHLTSTTTNFPTSWDLSMSQPFILRCILIIASFLGLLGTVAFAFF CFYLLLAVVAGATMLGLRIVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAG LTFVYYAAFGWKRKKLTGRFQLSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01460			LMBR1-like membrane protein (....		Lus10002488 [exp]	0	1
AT5G17250			Alkaline-phosphatase-like fami...		Lus10005793 [exp]	4.2	0.8740
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10011019 [exp]	5.0	0.8969
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10009426 [exp]	10.5	0.8818
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10023165 [exp]	12.2	0.8489
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10006064 [exp]	22.5	0.8438
AT1G55540		EMB1011	Nuclear pore complex protein (...		Lus10021859 [exp]	22.8	0.8654
AT5G24340			3'-5' exonuclease domain-conta...		Lus10022376 [exp]	25.2	0.8130
AT5G12220			las1-like family protein (.1.2...		Lus10036063 [exp]	30.9	0.8455
AT1G55540		EMB1011	Nuclear pore complex protein (...		Lus10010334 [exp]	32.6	0.8490
AT4G23540			ARM repeat superfamily protein...		Lus10035446 [exp]	33.4	0.8644

Compare expression of checked genes

Lus10002488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.