Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01470 329 / 1e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT2G26810 47 / 3e-06 Putative methyltransferase family protein (.1.2.3) AT4G35987 43 / 0.0001 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G49560 41 / 0.0005 Putative methyltransferase family protein (.1) AT1G63855 40 / 0.0006 Putative methyltransferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004816 [exp] 451 / 5e-161 AT5G01470 342 / 6e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10041869 [exp] 55 / 1e-08 AT1G63855 255 / 8e-87 Putative methyltransferase family protein (.1.2.3) Lus10028415 [exp] 50 / 4e-07 AT1G63855 248 / 2e-84 Putative methyltransferase family protein (.1.2.3) Lus10041898 [exp] 41 / 0.0008 AT5G13700 349 / 2e-113 polyamine oxidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G100100 [exp] 366 / 5e-129 AT5G01470 338 / 4e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.005G109000 [exp] 55 / 9e-09 AT1G63855 261 / 5e-89 Putative methyltransferase family protein (.1.2.3) Potri.009G068400 [exp] 47 / 4e-06 AT2G26810 345 / 2e-121 Putative methyltransferase family protein (.1.2.3) Potri.006G225600 [exp] 41 / 0.0006 AT2G26200 739 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10294 [flax] [poplar] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10002489 pacid=23170157 polypeptide=Lus10002489 locus=Lus10002489.g ID=Lus10002489.BGIv1.0 annot-version=v1.0 ATGGACATAGCGCTTTTCTCTCCGTCGGCGCTCTTCTCTGCCGGCGATGACGGCGCCTCTACTGATGGGGAGACGACGGAGACTGAGCAGCAGACCTACG TGGAACGGCGGCACAGTTTCCTTGGAATGGAGTTGGCCATTAGAGAGTTTTCGTTCCACCAATTGAATGCCAATTTGCTTTGGCCAGGAACGTTTTCCTT CGCAGAATGGTTGGTCCAGCACCGACCCTTGATTGAAGGCCGCCGCTGCCTTGAACTGGGCAGTGGGACTGGAGCTTTGGCTATATTTGTCCACAAGTCC TTCGATCTAGACATCACGACTTCAGATTACAATGATCAGGAGATCGAAGATAACATAGCTCACAACTGTCGAGACAATGGTGTCACGCCTGTTCTTCCTC ACATCAAGCATACGTGGGGAGATACTTTTCCAGCTGCTGACCCTGATTGGGACCTGATCATAGCAAGTGATATCCTACTGTATGTGAAACAGTACCAGAA CTTGATAAAGACTATTTCTCATCTGCTCCACAATCATAAACCCAGAAGAGAAGGAACGGCTTCTTCCATTGATAGCCAAGAAAATGGAGGAGGAGGCGGC ATCGAAAGAATACCCGTGCCGGCAGTCCTAATGAGCTGGAGACGGAGAATAGGGAAAGAGGACGAATCGCTCTTCTTTAGTGGCTGCGAAGGTGCCAATC TTCTTGTCCAGCACCTTGGTTCCCGAGTTTACTTGATCCATCCCGGGAACGTAGCTACCACATCATGCGTCCATCAATGCACCCTTGAAGATTGA
AA sequence Show only first row Show all	>Lus10002489 pacid=23170157 polypeptide=Lus10002489 locus=Lus10002489.g ID=Lus10002489.BGIv1.0 annot-version=v1.0 MDIALFSPSALFSAGDDGASTDGETTETEQQTYVERRHSFLGMELAIREFSFHQLNANLLWPGTFSFAEWLVQHRPLIEGRRCLELGSGTGALAIFVHKS FDLDITTSDYNDQEIEDNIAHNCRDNGVTPVLPHIKHTWGDTFPAADPDWDLIIASDILLYVKQYQNLIKTISHLLHNHKPRREGTASSIDSQENGGGGG IERIPVPAVLMSWRRRIGKEDESLFFSGCEGANLLVQHLGSRVYLIHPGNVATTSCVHQCTLED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01470			S-adenosyl-L-methionine-depend...		Lus10002489 [exp]	0	1
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10039185 [exp]	8.8	0.8530
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10030918 [exp]	8.9	0.8698
AT4G17020			transcription factor-related (...		Lus10012849 [exp]	11.0	0.8794
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10022383 [exp]	11.1	0.8744
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10002689 [exp]	15.8	0.8728
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030827 [exp]	18.1	0.8718
AT4G08310			unknown protein		Lus10003736 [exp]	20.8	0.8509
AT5G37480			unknown protein		Lus10001333 [exp]	21.2	0.8608
AT5G28060			Ribosomal protein S24e family ...		Lus10015941 [exp]	27.5	0.8399
AT2G38450			unknown protein		Lus10001262 [exp]	27.5	0.8696

Compare expression of checked genes

Lus10002489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.