Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51860 490 / 1e-171 CAX1-LIKE, ATHCX1, ATCAX3, CAX3 cation exchanger 3 (.1) AT2G38170 471 / 5e-164 RCI4, ATCAX1, CAX1 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) AT5G01490 385 / 2e-130 ATCAX4, CAX4 cation exchanger 4 (.1) AT1G55730 303 / 2e-98 ATCAX5 cation exchanger 5 (.1.2) AT3G13320 301 / 3e-98 ATCAX2, CAX2 cation exchanger 2 (.1) AT1G55720 286 / 1e-91 ATCAX6 cation exchanger 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004819 [exp] 721 / 0 AT2G38170 579 / 0.0 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10027791 [exp] 596 / 0 AT3G51860 575 / 0.0 cation exchanger 3 (.1) Lus10035507 [exp] 582 / 0 AT3G51860 579 / 0.0 cation exchanger 3 (.1) Lus10040674 [exp] 431 / 2e-148 AT2G38170 511 / 2e-180 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10033396 [exp] 281 / 5e-89 AT1G55730 571 / 0.0 cation exchanger 5 (.1.2) Lus10027136 [exp] 280 / 5e-89 AT3G13320 594 / 0.0 cation exchanger 2 (.1) Lus10018231 [exp] 277 / 5e-89 AT3G51860 365 / 1e-123 cation exchanger 3 (.1) Lus10034853 [exp] 283 / 2e-88 AT1G55730 575 / 0.0 cation exchanger 5 (.1.2) Lus10006068 [exp] 268 / 2e-81 AT3G13320 516 / 1e-176 cation exchanger 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G099900 [exp] 531 / 0 AT3G51860 563 / 0.0 cation exchanger 3 (.1) Potri.016G115500 [exp] 525 / 0 AT3G51860 570 / 0.0 cation exchanger 3 (.1) Potri.001G251200 [exp] 483 / 3e-169 AT3G51860 490 / 7e-172 cation exchanger 3 (.1) Potri.009G045800 [exp] 481 / 2e-168 AT3G51860 495 / 9e-174 cation exchanger 3 (.1) Potri.001G469800 [exp] 297 / 3e-96 AT1G55730 630 / 0.0 cation exchanger 5 (.1.2) Potri.011G166900 [exp] 291 / 5e-94 AT3G13320 627 / 0.0 cation exchanger 2 (.1) Potri.010G249200 [exp] 286 / 5e-92 AT1G55730 573 / 0.0 cation exchanger 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10002490 pacid=23170163 polypeptide=Lus10002490 locus=Lus10002490.g ID=Lus10002490.BGIv1.0 annot-version=v1.0 ATGGCAGCTCTGGACCAAGAAACGGGGCCGTGGCTGCTGGAGAACGGGAGCTACAAGGTCCTCGCCAAGGAATCGAGGCACCACGCCCACGGAAACAGCC ACCACGCCCGCACCGCTCACAACTTGTCCTCCTCTTCGTTGCGGAAGAAATCGGATCTCAAGCTTGTCTCCAGAGTCCGGTGTCGCTTGCTCCGATCTTT TTTAGCTAATCTCCAGGAAGTGATCCTCGGGACCAAGCTTTCCGTTCTCTTCCCGGCCATCCCTCTCGCTATAATCGCCAACTACTGCCACTTTGGAAGG CCGTGGATTTTTGCTCTGAGCTTGCTGGCGCTCACGCCACTGGCTGAACGTGTCAGCTTTTTGACAGAGCAAATTGCTTATTTCACCGGTCCTACAGTGG GAGGGCTGCTAAATGCAACATGTGGGAACGCAACTGAGCTGATCATCGCCATATTTGCACTGACCAGGAACAAGATAGACGTGGTGAAATACTCCCTCCT GGGTTCTATACTCTCCAACCTTCTCCTTGTACTTGGCACCTCCCTTTTCTGTGGTGGCCTCGGCAGCTTTGGCAAGCAGCAGAAATACGACAGGAGACAA GCAGATGTTAGCATGCTGATGCTTTTCCTTGGGCTGCTATGCCATTTGCTGCCACTTCTGTTCCGATTTGCAGCGGGAGACAACGCTGCTCTCACCACAG TTGCCTCGCTCCAGCTGTCGAGAGCAAGCAGCATTGTCATGCTCATTGGTTACGTGGTTTACATCGTATTTCAGCTGTGGACTCATCGCAGACTCTTTGA AGCAGAAGAGGTAGAGGAAGATGATGATGATGATGATCAGGAAGAAGAAGAGATAGCCGTGATAGGATTCTGGAGCGGATTTGCATGGCTGGTTGGAATG ACTATTGTCATTGCGGTTCTGTCGGAATATGTTGTGGCCACCATAGAGGATGCTTCGAATTCGTGGGGGCTTTCCGTAAGCTTCATCAGCATTATTCTAC TGCCAGTTGTAGGAAATGCTGCCGAACATGCTGGAGCTATCATCTTTGCTTTCAAAGACAAGTTGGACATATCACTTGGTGTTGCTCTGGGTTCTTCATG TCAAATCTCTCTGTTTGTGGTTCCACTATGCGTGATTGTTGCTTGGATAACTGGGATTGACATGGATCTGAATTTCAACATCGTTGAAACTGGGAGCCTA GCTATAGCAATCATTACCACAGCTTTCACTTTACAGGATGGTACCTCCAACTACTTGAAAGGACTAATCTTGCTGCTCTGTTACATCGTCATCGGAGCAT GCTTTTTCGTCACCACCTCGCCGCCAAACCAAGGGAATGGCATCAAGGACTCGGGCATGAATTCAATTACAGGAATGTCAGCTGCTTAG
AA sequence Show only first row Show all	>Lus10002490 pacid=23170163 polypeptide=Lus10002490 locus=Lus10002490.g ID=Lus10002490.BGIv1.0 annot-version=v1.0 MAALDQETGPWLLENGSYKVLAKESRHHAHGNSHHARTAHNLSSSSLRKKSDLKLVSRVRCRLLRSFLANLQEVILGTKLSVLFPAIPLAIIANYCHFGR PWIFALSLLALTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIAIFALTRNKIDVVKYSLLGSILSNLLLVLGTSLFCGGLGSFGKQQKYDRRQ ADVSMLMLFLGLLCHLLPLLFRFAAGDNAALTTVASLQLSRASSIVMLIGYVVYIVFQLWTHRRLFEAEEVEEDDDDDDQEEEEIAVIGFWSGFAWLVGM TIVIAVLSEYVVATIEDASNSWGLSVSFISIILLPVVGNAAEHAGAIIFAFKDKLDISLGVALGSSCQISLFVVPLCVIVAWITGIDMDLNFNIVETGSL AIAIITTAFTLQDGTSNYLKGLILLLCYIVIGACFFVTTSPPNQGNGIKDSGMNSITGMSAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10002490 [exp]	0	1
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10027791 [exp]	1.0	0.8907
AT3G58060			Cation efflux family protein (...		Lus10016239 [exp]	22.9	0.7080
AT3G27870			ATPase E1-E2 type family prote...		Lus10008776 [exp]	24.3	0.7215
					Lus10042098 [exp]	49.3	0.7615
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Lus10024243 [exp]	58.3	0.7274
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Lus10001475 [exp]	71.5	0.7297
AT5G53190		SWEET3, AtSWEET...	Nodulin MtN3 family protein (....		Lus10014932 [exp]	73.9	0.7272
AT2G27830			unknown protein		Lus10006996 [exp]	86.8	0.7164
AT1G10660			unknown protein		Lus10009991 [exp]	103.8	0.7094
AT2G48030			DNAse I-like superfamily prote...		Lus10029630 [exp]	108.4	0.7067

Compare expression of checked genes

Lus10002490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.