Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01520 361 / 1e-127 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) AT3G47160 313 / 6e-109 RING/U-box superfamily protein (.1.2) AT5G58787 293 / 6e-101 RING/U-box superfamily protein (.1.2) AT1G24440 199 / 2e-63 RING/U-box superfamily protein (.1) AT1G13195 192 / 5e-61 RING/U-box superfamily protein (.1.2) AT3G48030 48 / 3e-06 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT5G05280 46 / 3e-06 RING/U-box superfamily protein (.1) AT3G10910 45 / 7e-06 RING/U-box superfamily protein (.1) AT5G01960 46 / 1e-05 RING/U-box superfamily protein (.1) AT5G37280 45 / 1e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004821 [exp] 468 / 1e-169 AT5G01520 387 / 5e-138 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10005859 [exp] 326 / 6e-114 AT3G47160 372 / 5e-132 RING/U-box superfamily protein (.1.2) Lus10001209 [exp] 321 / 8e-112 AT3G47160 369 / 9e-131 RING/U-box superfamily protein (.1.2) Lus10036934 [exp] 223 / 4e-73 AT3G47160 239 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10037053 [exp] 222 / 1e-72 AT3G47160 234 / 1e-77 RING/U-box superfamily protein (.1.2) Lus10006447 [exp] 219 / 1e-71 AT3G47160 233 / 5e-77 RING/U-box superfamily protein (.1.2) Lus10011390 [exp] 219 / 1e-71 AT3G47160 233 / 3e-77 RING/U-box superfamily protein (.1.2) Lus10036937 [exp] 207 / 6e-67 AT1G24440 332 / 5e-116 RING/U-box superfamily protein (.1) Lus10006253 [exp] 205 / 5e-66 AT1G13195 336 / 4e-117 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G115300 [exp] 396 / 1e-141 AT5G01520 339 / 6e-119 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.006G099600 [exp] 395 / 6e-141 AT5G01520 324 / 4e-113 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.009G045400 [exp] 342 / 3e-120 AT3G47160 381 / 1e-135 RING/U-box superfamily protein (.1.2) Potri.004G041200 [exp] 331 / 9e-116 AT3G47160 313 / 1e-108 RING/U-box superfamily protein (.1.2) Potri.001G250800 [exp] 321 / 1e-111 AT3G47160 344 / 4e-121 RING/U-box superfamily protein (.1.2) Potri.011G050700 [exp] 319 / 6e-111 AT3G47160 311 / 5e-108 RING/U-box superfamily protein (.1.2) Potri.010G053000 [exp] 229 / 1e-75 AT1G13195 235 / 1e-77 RING/U-box superfamily protein (.1.2) Potri.008G181300 [exp] 214 / 2e-69 AT1G24440 352 / 1e-123 RING/U-box superfamily protein (.1) Potri.010G052700 [exp] 209 / 1e-67 AT1G24440 349 / 1e-122 RING/U-box superfamily protein (.1) Potri.012G093300 [exp] 205 / 4e-66 AT1G24440 312 / 4e-108 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10002491 pacid=23170168 polypeptide=Lus10002491 locus=Lus10002491.g ID=Lus10002491.BGIv1.0 annot-version=v1.0 ATGCGGAAATCGTTTAAGGATTCTCTCAAGGCTCTTGAAGCTGATATTCAGTTCGCTAACACTCTGGCATCTGTTTATCCTACAGAGTACGATGGCGGGT GTCTTCAGATGAGATTATCATACAGCCCTGCAGCTCACTTTTTCCTGTTTCTTGTCCAATGGACCGACTGCCATCTGGCCGGCGCCTTGGGATTGCTTCG GATTCTTATATACAAGGCTTATGAGGATGGGAAGACAAGCATGTCGATCCAAGAAAGGAAAGCTAGTTTGAGGGAGTTCTATGGAGTTGTGTTTCCTTCT TTGTTGCAACTTCAGAGAGGGATCACTGACGTGGACGAGAGGAAGCAGAGGGAGCTATGCGCCAAGTACAGCAAGAAGAAAGATTGCATGACAACGGACA AGGGGAAGCTCTCGGAAATCGACCTTGAAAGAGAAGAGGAATGTGGGATCTGCATGGAGAACAATACCAAAGTGGTGCTTCCTAAATGCAGCCATTCTCT CTGCCTCAAGTGCTACAAAACCTGGCGAGCAAGGTCACAGTCGTGTCCATTCTGCAGGGACAGCCTGAAAAGGGTGAACTCAGGGGATCTGTGGGTGTAC ACAAGCAGCAATGAAATAGCTGACCTCTCGGCTATAACGAGGGAGAACTTGAAGAGGCTGTTCATGTACATTGATAAGCTCCCTCTGATAGTGACGGACC GGACGGTTGTTTCCTATGACTTGAGGTACCAGTAG
AA sequence Show only first row Show all	>Lus10002491 pacid=23170168 polypeptide=Lus10002491 locus=Lus10002491.g ID=Lus10002491.BGIv1.0 annot-version=v1.0 MRKSFKDSLKALEADIQFANTLASVYPTEYDGGCLQMRLSYSPAAHFFLFLVQWTDCHLAGALGLLRILIYKAYEDGKTSMSIQERKASLREFYGVVFPS LLQLQRGITDVDERKQRELCAKYSKKKDCMTTDKGKLSEIDLEREEECGICMENNTKVVLPKCSHSLCLKCYKTWRARSQSCPFCRDSLKRVNSGDLWVY TSSNEIADLSAITRENLKRLFMYIDKLPLIVTDRTVVSYDLRYQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10002491 [exp]	0	1
AT4G19003		VPS25	E2F/DP family winged-helix DNA...		Lus10016007 [exp]	1.0	0.9344
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10008964 [exp]	2.0	0.9242
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10014363 [exp]	3.5	0.9246
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10014418 [exp]	4.5	0.9297
AT5G01800			saposin B domain-containing pr...		Lus10014162 [exp]	8.1	0.8975
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10018937 [exp]	9.5	0.9054
AT1G72510			Protein of unknown function (D...		Lus10015670 [exp]	12.8	0.9079
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10003994 [exp]	12.8	0.8716
AT2G16385			unknown protein		Lus10017979 [exp]	13.4	0.9196
AT3G49420			Got1/Sft2-like vescicle transp...		Lus10025494 [exp]	15.0	0.9092

Compare expression of checked genes

Lus10002491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.