Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08980 191 / 6e-63 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G53530 100 / 2e-27 Peptidase S24/S26A/S26B/S26C family protein (.1.2) AT1G29960 88 / 3e-22 AGL64 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G23465 81 / 1e-19 Peptidase S24/S26A/S26B/S26C family protein (.1) AT2G30440 62 / 1e-11 Plsp2B, TPP plastidic type I signal peptidase 2B, thylakoid processing peptide (.1) AT1G06870 62 / 1e-11 Plsp2A plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) AT3G24590 53 / 9e-09 PLSP1 plastidic type i signal peptidase 1 (.1) AT1G06200 51 / 3e-08 Peptidase S24/S26A/S26B/S26C family protein (.1) AT2G31140 49 / 1e-07 Peptidase S24/S26A/S26B/S26C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004822 [exp] 318 / 4e-113 AT3G08980 190 / 9e-63 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10005571 [exp] 86 / 2e-21 AT1G53530 213 / 1e-71 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10013703 [exp] 86 / 1e-19 AT1G78510 542 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10025393 [exp] 76 / 1e-17 AT1G53530 169 / 3e-54 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10032753 [exp] 60 / 9e-11 AT1G06870 379 / 3e-125 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10033448 [exp] 55 / 5e-10 AT1G53530 110 / 1e-32 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10023651 [exp] 55 / 4e-09 AT3G24590 318 / 2e-109 plastidic type i signal peptidase 1 (.1) Lus10034925 [exp] 53 / 1e-08 AT3G24590 316 / 1e-108 plastidic type i signal peptidase 1 (.1) Lus10011671 [exp] 49 / 9e-08 AT2G30440 172 / 7e-54 plastidic type I signal peptidase 2B, thylakoid processing peptide (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G115100 [exp] 229 / 4e-78 AT3G08980 204 / 3e-68 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.001G380400 [exp] 99 / 1e-26 AT1G53530 227 / 3e-77 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.005G092900 [exp] 94 / 2e-24 AT1G53530 189 / 5e-62 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.007G071400 [exp] 86 / 2e-21 AT1G53530 194 / 7e-64 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.014G036400 [exp] 66 / 4e-13 AT1G06870 377 / 8e-130 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.006G157900 [exp] 54 / 5e-09 AT3G24590 357 / 5e-124 plastidic type i signal peptidase 1 (.1) Potri.002G079600 [exp] 53 / 5e-09 AT3G24590 177 / 3e-55 plastidic type i signal peptidase 1 (.1) Potri.018G081800 [exp] 53 / 1e-08 AT3G24590 372 / 3e-130 plastidic type i signal peptidase 1 (.1) Potri.002G037900 [exp] 44 / 1e-05 AT1G06200 264 / 2e-90 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.005G225100 [exp] 44 / 1e-05 AT2G31140 274 / 2e-94 Peptidase S24/S26A/S26B/S26C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0299 [flax] [poplar] Peptidase_SF PF00717 [flax] [poplar] Peptidase_S24 Peptidase S24-like
Representative CDS sequence Show only first row Show all	>Lus10002492 pacid=23170171 polypeptide=Lus10002492 locus=Lus10002492.g ID=Lus10002492.BGIv1.0 annot-version=v1.0 ATGGCGGCTCGTGAAGTCTTGGTTAGCGCCGCGAAGAAGTTCTTTCTTTTGGGTATCATTGGAATCCCAGTTACTGACCGATTGGCCAGCGTCGTTCCAG TACGCGGTCAATCAATGTCGCCGACACTTAACCCCGATTCCGACTCCCTTTTCGATGATCGGGTTCTGGTAGAGAAGTTGTGCCTCCGGCGGTATAGTTT TTCTCACGGCGACGTGGTTGTTTTCCGTTCTCCATTTGATCGTAAGGAGAAACTCGTCAAGAGGATAATTGGCTTGCCTGGTGACTGGGTTGGGACTCCT CATACGTACGATGTGGTCAAGGTTCCAGAAGGCCATTGCTGGGTTGAGGGAGACAATATGATCCCCAGCATGGATTCCAGATCATTTGGCCCGATTCCAT TGGGTCTAGCGAGTGGAAGAGTGGTACGGATTGTATGGCCGCCTCAAAGGATGGGGAAGGTAGAACGAAAAGTACGGCAAGATAGACTGTGCCCTTCTAG ATGA
AA sequence Show only first row Show all	>Lus10002492 pacid=23170171 polypeptide=Lus10002492 locus=Lus10002492.g ID=Lus10002492.BGIv1.0 annot-version=v1.0 MAAREVLVSAAKKFFLLGIIGIPVTDRLASVVPVRGQSMSPTLNPDSDSLFDDRVLVEKLCLRRYSFSHGDVVVFRSPFDRKEKLVKRIIGLPGDWVGTP HTYDVVKVPEGHCWVEGDNMIPSMDSRSFGPIPLGLASGRVVRIVWPPQRMGKVERKVRQDRLCPSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08980			Peptidase S24/S26A/S26B/S26C f...		Lus10002492 [exp]	0	1
AT5G64680			unknown protein		Lus10018951 [exp]	11.4	0.7993
AT3G06778			Chaperone DnaJ-domain superfam...		Lus10016835 [exp]	15.8	0.7540
AT5G01470			S-adenosyl-L-methionine-depend...		Lus10004816 [exp]	17.9	0.7975
AT5G02740			Ribosomal protein S24e family ...		Lus10015045 [exp]	18.7	0.7942
AT5G63000			Mitochondrial import inner mem...		Lus10027691 [exp]	19.6	0.7756
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10023414 [exp]	24.7	0.7089
AT4G10090		ELP6	elongator protein 6 (.1)		Lus10040357 [exp]	35.7	0.7720
AT1G09300			Metallopeptidase M24 family pr...		Lus10031427 [exp]	38.9	0.7922
AT5G14600			S-adenosyl-L-methionine-depend...		Lus10014554 [exp]	39.1	0.7618
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10015915 [exp]	40.5	0.7415

Compare expression of checked genes

Lus10002492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.