Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40070 173 / 6e-48 unknown protein AT3G09000 114 / 6e-27 proline-rich family protein (.1) AT2G38160 92 / 2e-20 unknown protein AT5G01280 83 / 6e-17 unknown protein AT1G27850 57 / 2e-08 unknown protein AT3G08670 43 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004824 [exp] 635 / 0 AT3G09000 286 / 3e-90 proline-rich family protein (.1) Lus10040188 [exp] 170 / 1e-46 AT2G40070 533 / 0.0 unknown protein Lus10004390 [exp] 162 / 3e-46 AT2G40070 321 / 5e-107 unknown protein Lus10037838 [exp] 160 / 7e-43 AT2G40070 551 / 0.0 unknown protein Lus10030402 [exp] 158 / 3e-42 AT2G40070 561 / 0.0 unknown protein Lus10027767 [exp] 144 / 2e-36 AT2G40070 288 / 5e-86 unknown protein Lus10035528 [exp] 138 / 1e-34 AT2G40070 280 / 4e-83 unknown protein Lus10024526 [exp] 62 / 4e-10 AT2G40070 66 / 2e-11 unknown protein Lus10011374 [exp] 61 / 2e-09 AT2G40070 151 / 8e-37 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G066900 [exp] 181 / 6e-51 AT2G40070 321 / 1e-102 unknown protein Potri.010G190300 [exp] 176 / 6e-49 AT2G40070 368 / 6e-121 unknown protein Potri.016G114900 [exp] 162 / 6e-44 AT2G40070 352 / 7e-114 unknown protein Potri.010G177000 [exp] 62 / 3e-10 AT2G40070 82 / 9e-17 unknown protein Potri.010G056200 [exp] 58 / 1e-08 AT1G27850 240 / 1e-64 unknown protein Potri.016G139500 [exp] 54 / 1e-07 AT3G08670 245 / 2e-73 unknown protein Potri.006G110700 [exp] 50 / 4e-06 AT3G08670 251 / 1e-75 unknown protein Potri.008G178600 [exp] 48 / 2e-05 AT1G27850 567 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002493 pacid=23170156 polypeptide=Lus10002493 locus=Lus10002493.g ID=Lus10002493.BGIv1.0 annot-version=v1.0 ATGGTGACGACCAAGGACGAGGAGTTGTCACTGTTCTTCGAGCTTAGGAGACACGAGAAGGAAATGGAGAAAAGCAGTCTTCTCGTCGACAGTCCTGTTG GGATTGATGCCTCTTCAGGAACTAAAGGCGGGGTTGCACCATTGATTCAGCAGATGGCGCCACTCTATAAAAATGCAGCTGAAAAATTCTTGGATTCAGA GAATGAAAAATCGGATTATGATTGGCTTATTACACCACCAGGGACGCCACTTTTCCCATCCGTGGAGATGGAGGGCCAGAGCGCTATGATGAATCAGCTT GGGACGAATGCTCGTCCCACTGTGTTGAAGTCAAGGCTAACTAATATCCAGCAAGAGGCTCCGAGGACAAATGGAGCAACTAAAACAAAGATTATTGCTT TGCCATCTCCATTGAATTCATCCAGTGCTGGTACCAGGAGATCTTCGTTTTCCGGAGGACTAAAATCTGCTTCTAGACCTTCAACACCAACTTCACGACC CACTTTACCCTCAGGTAAGCCAGCACGATCTTCTACCCCTACGGGACGCCCCACGTTGTCTTCCACAAAGCCAGCAGCTGCATCAGCAAGAGCATCAACC CCTACAAGATCATCAACACCAACTGCTAGACACTCGTTACCATCTTCAAAGTCAACATCAAGATCATCAACTCCGACTCGTCACTCATCAGCTCCTGTTA GCAGATCCTCTTCTGTGACAAGATCAGCTTCAGTAGCATCCAAGAATCCAGTTCCATCACGTGGGATCTCACCAACAGTGAGGTCCAGGCCCTTGAAACC TGGTGACATGCCAGGGTTTTCGCATGATGCTCCACAGACTTCATTGCCAAAAAGGCCAGCTTCGGCTACCAAGGCAAGGCCTGGAGGTACTGGTACCCGA TCATCTTCAACTGGACGACCAAGTCAACAGTCTTGCTCTCCTGCCAAGGGTAGAACTTCAAATGGGGGCGGCCCAGGTGGTAAGCTGCCTGTTTCTATCA AGAACATCAGAACTACCGCCAGTGATTGTGATGATGTGAATCCAGTGCTTATGGGAACACAAAGCGTTGAAAGAGTAGTCAACATGAGAAAACTAGCACC ACCAAAGCAGGATGACCATCGCTCCTCTTACCAAAGCAACTTTGTTGCGAAGTCATCTTCACATGACAGCACAGGATTTGGCAGATCTCTTTCGAAGAAA TCGCTTGACATGGCAATGAGACATATGGATATTGGAAGAAGCATTACAAGCAACCTTAGAGCTTCTTCTGCGAGATCGGATGGCTCCACGAAGGGCAGAG CTATCAGTGCTTCAGAATCTCCCCATGCTACAAGCAGTACCGCTAGCTCTGAGCCGAGTGTCAACAACACTTTCTTCGTAGAAGCGGAAGAAAATGACAA AATCTGA
AA sequence Show only first row Show all	>Lus10002493 pacid=23170156 polypeptide=Lus10002493 locus=Lus10002493.g ID=Lus10002493.BGIv1.0 annot-version=v1.0 MVTTKDEELSLFFELRRHEKEMEKSSLLVDSPVGIDASSGTKGGVAPLIQQMAPLYKNAAEKFLDSENEKSDYDWLITPPGTPLFPSVEMEGQSAMMNQL GTNARPTVLKSRLTNIQQEAPRTNGATKTKIIALPSPLNSSSAGTRRSSFSGGLKSASRPSTPTSRPTLPSGKPARSSTPTGRPTLSSTKPAAASARAST PTRSSTPTARHSLPSSKSTSRSSTPTRHSSAPVSRSSSVTRSASVASKNPVPSRGISPTVRSRPLKPGDMPGFSHDAPQTSLPKRPASATKARPGGTGTR SSSTGRPSQQSCSPAKGRTSNGGGPGGKLPVSIKNIRTTASDCDDVNPVLMGTQSVERVVNMRKLAPPKQDDHRSSYQSNFVAKSSSHDSTGFGRSLSKK SLDMAMRHMDIGRSITSNLRASSARSDGSTKGRAISASESPHATSSTASSEPSVNNTFFVEAEENDKI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40070			unknown protein		Lus10002493 [exp]	0	1
AT1G07470			Transcription factor IIA, alph...		Lus10040769 [exp]	3.2	0.7147
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10005325 [exp]	5.1	0.7324
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10001087 [exp]	10.0	0.7240
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10019604 [exp]	14.5	0.6896
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10022653 [exp]	14.9	0.6969
					Lus10007681 [exp]	17.0	0.6702
AT5G62280			Protein of unknown function (D...		Lus10041061 [exp]	17.2	0.6227
AT5G62350			Plant invertase/pectin methyle...		Lus10038914 [exp]	17.3	0.7182
					Lus10027245 [exp]	21.5	0.6196
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Lus10024384 [exp]	23.5	0.7199

Compare expression of checked genes

Lus10002493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.