Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09010 441 / 3e-154 Protein kinase superfamily protein (.1) AT1G16670 308 / 5e-102 Protein kinase superfamily protein (.1) AT1G56120 296 / 5e-91 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 293 / 3e-90 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56130 291 / 5e-89 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 290 / 7e-89 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 281 / 1e-85 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 279 / 7e-85 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 278 / 2e-84 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 275 / 2e-83 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004825 [exp] 622 / 0 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1) Lus10011193 [exp] 357 / 2e-121 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1) Lus10018481 [exp] 359 / 4e-121 AT3G09010 414 / 7e-143 Protein kinase superfamily protein (.1) Lus10042851 [exp] 327 / 5e-109 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1) Lus10028149 [exp] 325 / 2e-108 AT1G16670 434 / 6e-152 Protein kinase superfamily protein (.1) Lus10042460 [exp] 318 / 7e-106 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10026207 [exp] 314 / 4e-104 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10001212 [exp] 322 / 6e-104 AT3G09010 384 / 2e-128 Protein kinase superfamily protein (.1) Lus10019933 [exp] 291 / 1e-95 AT1G16670 364 / 1e-124 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G114800 [exp] 457 / 1e-160 AT3G09010 486 / 3e-172 Protein kinase superfamily protein (.1) Potri.004G040200 [exp] 385 / 2e-132 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 381 / 8e-131 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.001G438400 [exp] 308 / 6e-102 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.011G142100 [exp] 304 / 2e-100 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1) Potri.011G112000 [exp] 301 / 5e-99 AT1G16670 476 / 2e-168 Protein kinase superfamily protein (.1) Potri.001G393200 [exp] 296 / 3e-96 AT1G16670 471 / 2e-165 Protein kinase superfamily protein (.1) Potri.010G221400 [exp] 290 / 3e-95 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.006G128500 [exp] 288 / 3e-94 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1) Potri.001G082900 [exp] 299 / 4e-92 AT1G56140 1097 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10002494 pacid=23170162 polypeptide=Lus10002494 locus=Lus10002494.g ID=Lus10002494.BGIv1.0 annot-version=v1.0 ATGAGCTGTAATTGCTCTGGTTTGTTCAGCTGCTTTACTGGGAACAAGAAGGACCGTGGACACTTGGCACCAGCAGAAGAGATTGCCACAAACAACTTGA GGGTGTTCTCTTACAATTCATTGAGATCAGCCACCTTGAACTTTCACCCGTCTAACAAGATTGGTGGGGGTGGCTTCGGCGTTGTCCACAAGGGAACCTT GAGAGATGGTAGCCAAGTGGCCATAAAGTCACTCTCTGCAGAATCTCAACAAACAACTGAGGAGTTCAAAGCTGAAATCAATATGATCTCCAACGTTCGC CACCCAAACCTTGTCCAACTTGTTGGCTGTTGTGTCGAGGCCAACCATCGAATATTGGTATATGAATATCTAGAGAACAACAGCCTTGCTACTGCTTTAC TTGGTTCGAAAAGGAAACACATAACTATGGATTGGGCAGCAAGAGCTGCAATCTGCCTTGGCACCGCGAATGGGATATCATTTCTCCACGAGGAAGCCGA GCCATCTATTGTCCACAGGGATATTAAGGCCAGTAATATTCTTCTAGCTGCCAATTTACAGCCCAAGATCGGAGATTTTGGACTGGCGAAACTCTTCCCG GACAATGTCACTCATGTCAGCACTCGAGTTGCAGGAACATTGGGATATCTGGCCCCAGAATATGCGCAACTAGGACAACTCACCAAGAAGGCTGACGTGT ACAGCTACGGAGTCCTTCTGCTTGAGATAATTAGTGCATGGAAACTGCAGAGTGAAGAAAGACTACTAGAACTGGTTGATCCAGAACTTGCCGACTATCC AGACCATGAAGTACTCAGATTCACTAAAGTTGCTCTCTTTTGCACTCAATTAGCTGCTAGCCAAAGACCCACGATGCTCCAAGTGGTGGAAATGCTGTCC AGAAACGTACACCTGAACGACAAGGCACTAACAGAGCCAGGGGTTTACAGAACCCGCAGCACTACTTCTAGACGCTCCGGTGGCAGTGGCGGAGGAAATG ATTCGTCATCCTCAGGGAAAGATCTTAAACGTAAACAGACAGTATTAAATCCTTCAATAGGCTCCGACGTAATTCTTCATTCTTGTGCTGCACTCACAGC CTGTGCAGCTGTCGTTGGGTCCTTTGCAGGTGGTTTAGGGATCATATGTGGAAGGACTGGTGTGTTTAAGCTTGAGCATTATTTACCGCATTCTGGAGAG GTCAGCAGCTTCCCAGGCTTAGGTCCTTGGATTACAGAAATGGATGGCTGCTTTTAA
AA sequence Show only first row Show all	>Lus10002494 pacid=23170162 polypeptide=Lus10002494 locus=Lus10002494.g ID=Lus10002494.BGIv1.0 annot-version=v1.0 MSCNCSGLFSCFTGNKKDRGHLAPAEEIATNNLRVFSYNSLRSATLNFHPSNKIGGGGFGVVHKGTLRDGSQVAIKSLSAESQQTTEEFKAEINMISNVR HPNLVQLVGCCVEANHRILVYEYLENNSLATALLGSKRKHITMDWAARAAICLGTANGISFLHEEAEPSIVHRDIKASNILLAANLQPKIGDFGLAKLFP DNVTHVSTRVAGTLGYLAPEYAQLGQLTKKADVYSYGVLLLEIISAWKLQSEERLLELVDPELADYPDHEVLRFTKVALFCTQLAASQRPTMLQVVEMLS RNVHLNDKALTEPGVYRTRSTTSRRSGGSGGGNDSSSSGKDLKRKQTVLNPSIGSDVILHSCAALTACAAVVGSFAGGLGIICGRTGVFKLEHYLPHSGE VSSFPGLGPWITEMDGCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09010			Protein kinase superfamily pro...		Lus10002494 [exp]	0	1
AT1G77220			Protein of unknown function (D...		Lus10028621 [exp]	4.1	0.8204
AT3G22260			Cysteine proteinases superfami...		Lus10027312 [exp]	9.8	0.7890
AT1G06870		Plsp2A	plastidic type I signal peptid...		Lus10032753 [exp]	18.3	0.7920
AT5G52580			RabGAP/TBC domain-containing p...		Lus10006646 [exp]	20.4	0.7618
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031891 [exp]	23.3	0.8101
AT1G59590		ZCF37	ZCF37 (.1)		Lus10007746 [exp]	27.9	0.7472
AT5G35180			Protein of unknown function (D...		Lus10019068 [exp]	37.1	0.7603
AT2G46060			transmembrane protein-related ...		Lus10018827 [exp]	40.5	0.7417
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Lus10040664 [exp]	41.0	0.7176
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10033387 [exp]	42.2	0.7439

Compare expression of checked genes

Lus10002494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.