Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01260 150 / 2e-41 Carbohydrate-binding-like fold (.1.2) AT5G26570 56 / 6e-08 ATGWD3, OK1, PWD PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004826 [exp] 821 / 0 AT5G01260 160 / 1e-44 Carbohydrate-binding-like fold (.1.2) Lus10027767 [exp] 197 / 1e-54 AT2G40070 288 / 5e-86 unknown protein Lus10035528 [exp] 194 / 2e-53 AT2G40070 280 / 4e-83 unknown protein Lus10018226 [exp] 137 / 2e-35 AT5G01260 124 / 3e-32 Carbohydrate-binding-like fold (.1.2) Lus10041275 [exp] 52 / 9e-07 AT5G26570 1353 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Lus10037434 [exp] 51 / 2e-06 AT5G26570 1508 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G114500 [exp] 196 / 1e-56 AT5G01260 169 / 1e-48 Carbohydrate-binding-like fold (.1.2) Potri.006G099200 [exp] 184 / 3e-52 AT5G01260 156 / 8e-44 Carbohydrate-binding-like fold (.1.2) Potri.009G044800 [exp] 153 / 1e-41 AT5G01260 149 / 8e-42 Carbohydrate-binding-like fold (.1.2) Potri.002G234500 [exp] 49 / 6e-06 AT5G26570 1561 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.014G147900 [exp] 49 / 1e-05 AT5G26570 1509 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.014G170300 [exp] 47 / 3e-05 AT2G04270 1009 / 0.0 RNAse E/G-like (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF00686 [flax] [poplar] CBM_20 Starch binding domain
Representative CDS sequence Show only first row Show all	>Lus10002495 pacid=23170155 polypeptide=Lus10002495 locus=Lus10002495.g ID=Lus10002495.BGIv1.0 annot-version=v1.0 ATGGAATCCGTTGGGAGCGTTTCTGCGTCTCCGTCTTCTAACGCCTTCGTTTTACGCGGAAATGGATGCAGAAGCTTGCTTCCTTTCACTCAATCTAAAT TTCGTAGAATCTGTATCAGCCTTCTCCCTGCTTCAACGAAGCCTGGAAATGGAAATTCGCTGCATTCCGCTAGCTTGAAGGAGCAGTGGAGTAGAACTTT TTCTCCAATTTCAGCTTCTGTTTCTCTCTCGCAGGATTCTGTCCAGGTCAGCGGTCAACCCAATCTCTCAGCTGTTAGCGCTACTGTACGAGTGCGCTTC CTTCTACAGAAGGAATGCTCTTTTGGGGAGCAATTTGTGTTGGTTGGAGACGATCCTGTGCTGGGTTTATGGGATCCTGAAATTGGAGTACCATTGGAAT GGTCAGATGGCCATGTTTGGGCTGCAGAACTAGATATACCGATTGGTAGAACAATCAAGTACAAGTTCATCCTCAAAGGAACTGATGGCAAGATGCTGTG GCAACCGGACCCTGATCGAGTTCTCGAGACATGGGAAGCTTCAAATATCATTATTGTTCTTGAAGATTGGCAAGATCCTCACTTTCAGAAGATTGTGGAG GAAGAAGAAGAAGAACACGCCACTCAGAGTCTTGTAAATGAAGATCAAGTGGTTGCTGAGGATTTCAAGCCTGTTACTGATTCTGATTTGCAGATTGTTA CAGAGAATTCGGCTCCCGTTGAAAATCCTAGTTTGCAGATTGTAGCAGAGAATTTGGCTCCTGAAGAGAGAAGAAGAGTTATTAATGATGTAATGGAAGA ACAACGCACTGAGAGTGTTGTGAAGGAAGAAGAGTCAGTGGCCAATGAAGACTCTGCCAACTCTAGTTTGCACATTATTGAGGAGCCAAAATTGGCTCCG GATCAAGACACTGAATCTGTTTCTATCTCACTGGATCCACCATTTCCAGCAGACCATGAGACAGACATTGGTGCTGCTACCTCACTAGAGGATCCCATTC CTGTTTTTGCAGATGATATCAGTCACCACCATGAAGAGGAGAGTTCCACAGGCCATCAACTTTTAGGTGAAAATACTACTAGTCACTCAAAGGAGGAGCC TTTGTTACCTCCGAGTAACAACGTGGACGATCTTAATGATATTGACAGTGTCTCATCAGCCATTGATAGAAACTCGGTACCCGGTGAAAGTGTGCATGTA CTCGTACCGGACTTATCTCCAGTTCCCGAGAACATAACCGACACAGATGCTACCAGTGAAAGCGAAAGCTGTGGAAGTGTTGCCTTTGATGCTTCAGTTG AAGGAGCTAATAACAACACGAGTCCCAGTTCACAAGAGAATGGGATTGTGATCGAGTGCAATAAGACAGCAACAGTAGAGCTACACGAGGAGGAAGGAAC TGGACAACAGATGTCTGCTGGTTTAGCAAGTGAAGGACATTCAAGACCTAGCGGAGGGAAAGATTGTGTATTGCAAAGCGATGTACAATGGGTTCAGAAA CTGCTTAGTAACCTAGGACTGCTGTAA
AA sequence Show only first row Show all	>Lus10002495 pacid=23170155 polypeptide=Lus10002495 locus=Lus10002495.g ID=Lus10002495.BGIv1.0 annot-version=v1.0 MESVGSVSASPSSNAFVLRGNGCRSLLPFTQSKFRRICISLLPASTKPGNGNSLHSASLKEQWSRTFSPISASVSLSQDSVQVSGQPNLSAVSATVRVRF LLQKECSFGEQFVLVGDDPVLGLWDPEIGVPLEWSDGHVWAAELDIPIGRTIKYKFILKGTDGKMLWQPDPDRVLETWEASNIIIVLEDWQDPHFQKIVE EEEEEHATQSLVNEDQVVAEDFKPVTDSDLQIVTENSAPVENPSLQIVAENLAPEERRRVINDVMEEQRTESVVKEEESVANEDSANSSLHIIEEPKLAP DQDTESVSISLDPPFPADHETDIGAATSLEDPIPVFADDISHHHEEESSTGHQLLGENTTSHSKEEPLLPPSNNVDDLNDIDSVSSAIDRNSVPGESVHV LVPDLSPVPENITDTDATSESESCGSVAFDASVEGANNNTSPSSQENGIVIECNKTATVELHEEEGTGQQMSAGLASEGHSRPSGGKDCVLQSDVQWVQK LLSNLGLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01260			Carbohydrate-binding-like fold...		Lus10002495 [exp]	0	1
AT2G45530			RING/U-box superfamily protein...		Lus10008286 [exp]	1.0	0.9514
AT1G50440			RING/FYVE/PHD zinc finger supe...		Lus10033381 [exp]	1.4	0.9488
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Lus10039181 [exp]	2.8	0.9332
AT5G46550			DNA-binding bromodomain-contai...		Lus10011989 [exp]	3.5	0.9283
AT5G13240			transcription regulators (.1)		Lus10007961 [exp]	3.6	0.9273
AT4G03115			Mitochondrial substrate carrie...		Lus10024769 [exp]	3.7	0.9340
AT3G47160			RING/U-box superfamily protein...		Lus10001209 [exp]	3.9	0.9365
AT1G73350			unknown protein		Lus10031897 [exp]	4.4	0.9219
AT3G49640			Aldolase-type TIM barrel famil...		Lus10003486 [exp]	6.2	0.9433
AT4G03020			transducin family protein / WD...		Lus10042682 [exp]	6.3	0.9299

Compare expression of checked genes

Lus10002495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.