Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38110 672 / 0 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT1G01610 559 / 0 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT4G00400 544 / 0 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT3G11430 455 / 1e-156 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT5G06090 429 / 8e-147 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT1G06520 405 / 4e-136 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT4G01950 328 / 4e-107 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1) AT1G02390 317 / 3e-102 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT3G11325 296 / 4e-96 Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004833 [exp] 728 / 0 AT2G38110 512 / 3e-180 glycerol-3-phosphate acyltransferase 6 (.1) Lus10010741 [exp] 535 / 0 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10036684 [exp] 532 / 0 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10004711 [exp] 404 / 9e-137 AT3G11430 743 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Lus10017794 [exp] 399 / 2e-135 AT3G11430 392 / 5e-133 glycerol-3-phosphate acyltransferase 5 (.1) Lus10020767 [exp] 400 / 8e-135 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10010934 [exp] 391 / 8e-131 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10031396 [exp] 378 / 1e-125 AT1G06520 595 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10001449 [exp] 322 / 1e-104 AT4G01950 517 / 2e-180 glycerol-3-phosphate acyltransferase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G113100 [exp] 726 / 0 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G097800 [exp] 724 / 0 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.014G085500 [exp] 576 / 0 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.016G063900 [exp] 564 / 0 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G198100 [exp] 554 / 0 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.005G202200 [exp] 452 / 4e-155 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.010G201200 [exp] 442 / 8e-152 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.008G058200 [exp] 432 / 4e-148 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1) Potri.002G192600 [exp] 354 / 1e-116 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10002500 pacid=23170169 polypeptide=Lus10002500 locus=Lus10002500.g ID=Lus10002500.BGIv1.0 annot-version=v1.0 ATGGGGACTAATTGCTACTTCAGGCCAGTCACAAGATGTAGCAGTGAAAGACGTTCAGATCAGACAGTGGTGGCAGACCTAGACGGCACCCTTCTGCTGT CATCAAGTTCATTCCCTTACTTTTTGCTTGTTGCTCTTGAAGCCGGAAGCCTTTTTAGAGCACTTATACTTGTGTTATCAGTACCTCTCATGTACTTACT GTCCTATTTTGCTTCAGAAGCTACGGCAAACAAGTGGCTCATTTTCATAGCCTTTTCTGGACTTAAGTTAAAAGATATTGAACTCGTGTCGAGGTCTGTC TTGCCTAGGTTTTATGCAGATGACGTTCATCCGGAGGCTTGGGGCATATTTGATTCATTCGGCAAGAAATACATAGTTACTGACAGTCCCAGGATCATGG TTGAACCGTTTTCCAAAATGTTTCTAGGGGCTGACAAGGTTCTTGGCACAGAGTTACAGATCACAGATTCCGGGAGAGCAACTGGATTCGTTGCGAAACC TGGACTTATGGTTGGACAGCAGAAAAGAGATGCAGTCATTAAGGATTTCGGCGCAAATTTGCCAGATGTAGGCATGGGGGATCAAGTTTCTGATTACCCT TTCATGTTCTTATGCAAGGAAAGTTACATAGTACCAAGAACAAAATGCCAGCCACTACCAAGAAAGAAGCTCAGAAGCCCTTTGATAATCCATGATGGCC GGTTGGTTCAGAGACCTACGCCTTTGGTTGCTCTTTTGACCTTCTTATGGATGCCGTTTGGTTTTATTCTTGCCTCAGTGCGGCTATTTCACTGCTTGCC TTTACCGAAGAGTGTCGTTCACTATACTTGCCAGCTTTCTGGAGTGAAGCTTATAATTAAAGGTACCCCTCCACAGCCTGCAGCAAAGGGCAGAAGTGGA GTCGTCTTTGTCTGCAATCACCGTACACTTGCAGATCCTCCATTGATAGCCATTGCGTTGGGGAGAGAGCTAAGTTGTGTTACATACAGCATAAGCAAGT ACACTGAGATGATAGCGCCAGTGAAAGCAGTTGCTCTGTCTAGAGAAAGAGAGAAAGATGCAGCTCGGATCAAGCAGCTGCTGGAGGAAGGTGACTTGGT AATTTGCCCCGAAGGTACCACTTGCAGGGAACCGTTCCTACTGAGATTCAGCCCTCTCTTTGCAGAGCTGACAGACAGGATCGTGCCAGTCGCGCTTAAG GTGAGGCAGAGCATGTTCAACGGGACAAGTGCGCGGGGATACAAGTGGTTGGATCCATACTTTCTGTTCATGAACCCGATACCAACTTACGAGTTCACGT TCTTGGATCAGCTGCCTGAAGAGATGACCTGCAAAGGAGGGAAATCGGCCATTGAAGTTGCAAACTACATCCAGAGGGTGCTTGGTGACACTCTGAGATT TGAGTGCACGAAATTGACTAGGAAGGACAAATATGCAATGCTTGCAGGAACAGACGGTTCTGTTCAGTCTGCGAAGAAGGGGGACTGA
AA sequence Show only first row Show all	>Lus10002500 pacid=23170169 polypeptide=Lus10002500 locus=Lus10002500.g ID=Lus10002500.BGIv1.0 annot-version=v1.0 MGTNCYFRPVTRCSSERRSDQTVVADLDGTLLLSSSSFPYFLLVALEAGSLFRALILVLSVPLMYLLSYFASEATANKWLIFIAFSGLKLKDIELVSRSV LPRFYADDVHPEAWGIFDSFGKKYIVTDSPRIMVEPFSKMFLGADKVLGTELQITDSGRATGFVAKPGLMVGQQKRDAVIKDFGANLPDVGMGDQVSDYP FMFLCKESYIVPRTKCQPLPRKKLRSPLIIHDGRLVQRPTPLVALLTFLWMPFGFILASVRLFHCLPLPKSVVHYTCQLSGVKLIIKGTPPQPAAKGRSG VVFVCNHRTLADPPLIAIALGRELSCVTYSISKYTEMIAPVKAVALSREREKDAARIKQLLEEGDLVICPEGTTCREPFLLRFSPLFAELTDRIVPVALK VRQSMFNGTSARGYKWLDPYFLFMNPIPTYEFTFLDQLPEEMTCKGGKSAIEVANYIQRVLGDTLRFECTKLTRKDKYAMLAGTDGSVQSAKKGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10002500 [exp]	0	1
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10028425 [exp]	4.6	0.8804
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10015407 [exp]	6.0	0.7809
AT3G25690		AtCHUP1, CHUP1	Arabidopsis thaliana CHLOROPLA...		Lus10034264 [exp]	7.5	0.8212
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Lus10007987 [exp]	9.4	0.7229
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10037394 [exp]	13.8	0.7768
AT1G01300			Eukaryotic aspartyl protease f...		Lus10039126 [exp]	14.4	0.8354
AT4G03410			Peroxisomal membrane 22 kDa (M...		Lus10018568 [exp]	14.8	0.8354
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10040414 [exp]	16.9	0.7504
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10039643 [exp]	22.0	0.8065
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10010587 [exp]	24.7	0.7732

Compare expression of checked genes

Lus10002500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.