Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38110 301 / 4e-98 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT4G00400 235 / 2e-72 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT1G01610 225 / 7e-69 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT3G09030 192 / 1e-56 BTB/POZ domain-containing protein (.1) AT3G11430 119 / 3e-29 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT5G06090 109 / 6e-26 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT1G06520 82 / 1e-16 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT3G11325 73 / 4e-14 Phospholipid/glycerol acyltransferase family protein (.1) AT5G41330 71 / 3e-13 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) AT1G02390 66 / 1e-11 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004835 [exp] 365 / 2e-127 AT2G38110 320 / 2e-108 glycerol-3-phosphate acyltransferase 6 (.1) Lus10004834 [exp] 297 / 2e-99 AT3G09030 283 / 4e-93 BTB/POZ domain-containing protein (.1) Lus10002500 [exp] 267 / 4e-85 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10018832 [exp] 238 / 3e-74 AT3G11430 390 / 3e-132 glycerol-3-phosphate acyltransferase 5 (.1) Lus10017794 [exp] 236 / 1e-73 AT3G11430 392 / 5e-133 glycerol-3-phosphate acyltransferase 5 (.1) Lus10038089 [exp] 226 / 7e-73 AT3G09030 144 / 7e-41 BTB/POZ domain-containing protein (.1) Lus10010741 [exp] 192 / 6e-56 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10036684 [exp] 190 / 3e-55 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10004833 [exp] 119 / 2e-29 AT2G38110 512 / 3e-180 glycerol-3-phosphate acyltransferase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G097800 [exp] 337 / 2e-112 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G113100 [exp] 326 / 5e-108 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.014G085500 [exp] 246 / 5e-77 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.016G112900 [exp] 213 / 1e-64 AT3G09030 525 / 0.0 BTB/POZ domain-containing protein (.1) Potri.006G198100 [exp] 207 / 5e-62 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G063900 [exp] 204 / 5e-61 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.010G201200 [exp] 123 / 5e-31 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.005G202200 [exp] 122 / 3e-30 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.008G058200 [exp] 119 / 1e-29 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1) Potri.003G129300 [exp] 72 / 2e-13 AT5G41330 579 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002501 pacid=23170158 polypeptide=Lus10002501 locus=Lus10002501.g ID=Lus10002501.BGIv1.0 annot-version=v1.0 ATGGTCATGGAAAAGCGACGCCGTTTCGAACCGGTCACCAAATGCACCACAGAAGGCCGGTCGAACCAGGCAGTGGCAGCCGACCTGGACGGGACCCTCC TCGTCTCAACAAACTCCTTCCCTTACTTCCTCCTCGTCGCCCTCGAGGCCGGAAGCCTCCTCCGCGCCGTGCTCCTCCTCTTATCCGTCCCGTTCGTCTA CGTCACCTACCTTTTTGTCTCCGAGGCCTTTGCCAGCAAGACCTTCGTCTTCATAGCCTTGTCAGGTCTCAAGATGCGCGACATCGAGCTCGTTTCCCGG TCTGTCCTCCCTAGGTTCTACGCCGATGACGTCCACCCGGACACGTGGAGGGTGTTCAATTCGTTCGGGAAGAGGTATATTGTGACCGCAAACCCACGTG TAATGGTGGAGCCGTTTGTGAAGACCTTCTTGGGTGCTGACAAGGTGCTAGGGACTGAACTGGAGGTTACTAAATCGGGTCGGGCTACCGGGTTTGTGAA GAGACCCGGGATACTGGTAGGGAAGCATAAGAGGGATGCGATTCTCAAGGAATTCGGGTCAGAAGACTTGCCTGATTTGGGTCTTGGAGATCAGGAGACC GACCATGATTTCATGTCATTGTGTAAGCGTGGTTTGGGCGACGAACGATCTGGTGACGTGGTTTGGGAGACGAACGAACCAGGTTCGGGTCGGAGCAGCA GGTTCGGGGATTCGTGCTCCGACATGGCTGTTGATGTGAAGGAGTCGACTTTGTTCAAGGTTTGTTCCAAATCTGGCGATTTAGAGGTGGCTGATATCCG TTATTTGGGTGATGATCCGTGGGTGTATTTAGAAGATAAGAATCCCAGCCTGAGACACACCGGTGAGCCTGGAATCAGCAACGTATTGCATTGCTATAAT GGTCAGGTTTTTGTGGGAGATGGAGCCTTGGAAGTTTGGTCGAGAGTTCAGGAGAAGGAAGGAAGCGGAGGAGTGGAAGTGGAAGGAGGCAGAGTGATTA CAAACGATGATAAGTACAGAAGGAATTTTGTGGATAAAGTGGAGGATTCAGAGAAAGGGGTCATCAGGAAGATAGAAGGAGGTGGGAATCGGTTGTTCGT CAGTAGGGAAGAGGTTGAGGGGATTGAAGTTTGGGAAAGTTCCAATCTTTCTGCTGGAGTCTCAGTTTTGTGA
AA sequence Show only first row Show all	>Lus10002501 pacid=23170158 polypeptide=Lus10002501 locus=Lus10002501.g ID=Lus10002501.BGIv1.0 annot-version=v1.0 MVMEKRRRFEPVTKCTTEGRSNQAVAADLDGTLLVSTNSFPYFLLVALEAGSLLRAVLLLLSVPFVYVTYLFVSEAFASKTFVFIALSGLKMRDIELVSR SVLPRFYADDVHPDTWRVFNSFGKRYIVTANPRVMVEPFVKTFLGADKVLGTELEVTKSGRATGFVKRPGILVGKHKRDAILKEFGSEDLPDLGLGDQET DHDFMSLCKRGLGDERSGDVVWETNEPGSGRSSRFGDSCSDMAVDVKESTLFKVCSKSGDLEVADIRYLGDDPWVYLEDKNPSLRHTGEPGISNVLHCYN GQVFVGDGALEVWSRVQEKEGSGGVEVEGGRVITNDDKYRRNFVDKVEDSEKGVIRKIEGGGNRLFVSREEVEGIEVWESSNLSAGVSVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10002501 [exp]	0	1
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10000910 [exp]	1.7	0.9362
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10004571 [exp]	2.4	0.9352
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10037640 [exp]	4.0	0.8905
AT3G11210			SGNH hydrolase-type esterase s...		Lus10028290 [exp]	4.5	0.8413
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10019453 [exp]	4.6	0.8989
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Lus10021021 [exp]	5.7	0.8698
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009961 [exp]	7.1	0.8876
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10000338 [exp]	7.2	0.8532
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10040644 [exp]	9.2	0.8790
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10004835 [exp]	10.4	0.8625

Compare expression of checked genes

Lus10002501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.