Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29170 311 / 4e-107 ATMND1 Mnd1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G069800 [exp] 336 / 4e-117 AT4G29170 294 / 8e-102 Mnd1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF03962 [flax] [poplar] Mnd1 Mnd1 HTH domain
Representative CDS sequence Show only first row Show all	>Lus10002503 pacid=23173047 polypeptide=Lus10002503 locus=Lus10002503.g ID=Lus10002503.BGIv1.0 annot-version=v1.0 ATGGACGTTTACGTCATATTTGAATGTAGGGCGTCGTTTAATTCGAAAACTAGGGCGTCGTTTAGGAACCTCTACTCAAAACGTGGGGTATGCGAGAAGC TTCTCCTTCACCTCTCCCAGTCTCACAATCCTAAAGTTTCAAATCCACTTCAGAGTAACGCGAAAGGTAGAGTAAGGAAGACGACTGCCAATCGAATCGA GGATTATTCTCCAGTTGCAGCAAGCACTCCAACAGCTTCATCGGCGTCTAAGAAACGGGGACTTTCTTTGGAGGAGAAGCGTGAGAAGATGCTTCAAATC TTCTACGACTCCCAGGACTTCTTTCTTCTCAAGGAACTTGAAAAGATGGGTCCTAAGAAAGGTGTAATCAGCCAGTCTGTGAAAGATGTTATCCAAAGTC TTGTGGATGACGACCTTGTTTTGAAAGACAAGATAGGGACATCGGTATACTTTTGGAGCCTTCCCAGCTTGGCTGGAAATCAGTTGAGGAATGTATGCCA CAAACTTGAATCTGATTTGCAAAGTAGTAAGAAGAGGTACGTGGAGCTTGTTGAACAGTGTGAAGCACTGAAGAAGGGACGTGAAGAATCTGATGAACGA GAGACTGCCTTAGCTGACCTAAAAGAAGTTGAAGCAAAGCATAACAAGCTGAAGGAGGAGATGGAAAAGTACGCACACAACGATCCAGCTGCCTTCGAAG AAATGAAGAAAGCTATAAGTGTTGCCCAATCAGCAGCAAACAGATGGACAGACAATATCTTCACAGTAAAGCAATGGTGTTCAAACAATTTTCCCCAGGC CAAAGAGCAGCTGGAAAGGTTGTACACGGAGCTGGGGATAACGGATGACTTAGACTACCTGGAGTCTGGGCCTGCTGTGCTGCCGAATTCAACGGAAGCA GCTCCCTGA
AA sequence Show only first row Show all	>Lus10002503 pacid=23173047 polypeptide=Lus10002503 locus=Lus10002503.g ID=Lus10002503.BGIv1.0 annot-version=v1.0 MDVYVIFECRASFNSKTRASFRNLYSKRGVCEKLLLHLSQSHNPKVSNPLQSNAKGRVRKTTANRIEDYSPVAASTPTASSASKKRGLSLEEKREKMLQI FYDSQDFFLLKELEKMGPKKGVISQSVKDVIQSLVDDDLVLKDKIGTSVYFWSLPSLAGNQLRNVCHKLESDLQSSKKRYVELVEQCEALKKGREESDER ETALADLKEVEAKHNKLKEEMEKYAHNDPAAFEEMKKAISVAQSAANRWTDNIFTVKQWCSNNFPQAKEQLERLYTELGITDDLDYLESGPAVLPNSTEA AP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29170		ATMND1	Mnd1 family protein (.1.2)		Lus10002503 [exp]	0	1
AT1G31812		ACBP6, ACBP	acyl-CoA-binding protein 6 (.1...		Lus10013605 [exp]	1.7	0.8417
AT3G10620		ATNUDX26	nudix hydrolase homolog 26 (.1...		Lus10033839 [exp]	2.6	0.7974
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10015295 [exp]	2.8	0.8168
AT5G09920		NRPB4, ATRPB15....	RNA polymerase II, Rpb4, core ...		Lus10005796 [exp]	3.5	0.8052
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013076 [exp]	5.9	0.8050
AT5G58005			Cytochrome c oxidase, subunit ...		Lus10036285 [exp]	7.2	0.7698
AT3G50860			Clathrin adaptor complex small...		Lus10041742 [exp]	8.7	0.7672
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10007300 [exp]	9.4	0.7734
AT5G42470			unknown protein		Lus10033139 [exp]	12.0	0.7669
AT1G78790			unknown protein		Lus10042781 [exp]	12.8	0.7316

Compare expression of checked genes

Lus10002503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.