Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30440 169 / 7e-52 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT4G00110 162 / 7e-49 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT2G45310 162 / 7e-49 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT1G02000 160 / 4e-48 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT4G12250 149 / 4e-44 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT3G23820 147 / 7e-43 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT1G78570 39 / 0.0008 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008893 [exp] 195 / 1e-61 AT4G30440 767 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10019967 [exp] 175 / 4e-54 AT4G30440 688 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10015496 [exp] 175 / 5e-54 AT4G30440 764 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10032391 [exp] 159 / 8e-48 AT1G02000 620 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Lus10009288 [exp] 159 / 1e-47 AT4G00110 704 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10000787 [exp] 158 / 3e-47 AT4G00110 731 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10030281 [exp] 158 / 3e-47 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10015876 [exp] 158 / 4e-47 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10016640 [exp] 149 / 8e-44 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G146500 [exp] 156 / 1e-46 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.014G068400 [exp] 155 / 2e-46 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.003G114600 [exp] 155 / 2e-46 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.012G128200 [exp] 155 / 2e-46 AT1G02000 544 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.018G100400 [exp] 154 / 5e-46 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.006G178500 [exp] 151 / 6e-45 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.001G320000 [exp] 147 / 3e-43 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.017G059100 [exp] 145 / 4e-42 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.001G383500 [exp] 39 / 0.0007 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.011G103700 [exp] 38 / 0.001 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10002511 pacid=23166287 polypeptide=Lus10002511 locus=Lus10002511.g ID=Lus10002511.BGIv1.0 annot-version=v1.0 ATGCTCGAGAGCCACGAGATCTACGTTGTCGCCGGAGACGTCAACGACGGGAAGCTATTGTCAAAGCTCTTCCGTGTTGTAGCATTCACTCACGTGATGT ATCTCGCAACTCAGACAGGAGTCTGTTACGCGATGGAGAATTTGAATTCATATGCCCATTCAAATATTACAGGTTTAGGTACGCTCCTCGAGATCTGCAA GTCAGCAGATCCACAACCAGCGGTCCTCAGGTCTTCTTCAAGCTACGTCCCCGAATTAAATGACAAAGCTTCGTTCTCTGAGTCCGATCAAACCGATCAA CCGGCGGGTCTCTATGTTGCGACGAAGAAATCCGAAGAAAAAATCACTCACACTTACAATCACAGTGAGGTTGAGGAAGAACTTGGTGCCGAACGCCATT GTGGACGAGGAAGAAGAAAGAGATAA
AA sequence Show only first row Show all	>Lus10002511 pacid=23166287 polypeptide=Lus10002511 locus=Lus10002511.g ID=Lus10002511.BGIv1.0 annot-version=v1.0 MLESHEIYVVAGDVNDGKLLSKLFRVVAFTHVMYLATQTGVCYAMENLNSYAHSNITGLGTLLEICKSADPQPAVLRSSSSYVPELNDKASFSESDQTDQ PAGLYVATKKSEEKITHTYNHSEVEEELGAERHCGRGRRKR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10002511 [exp]	0	1
AT1G24590	AP2_ERF	ESR2, DRNL, SOB...	FOR SUPPRESSOR OF PHYTOCHROMEB...		Lus10017907 [exp]	1.0	0.8966
AT1G28030			2-oxoglutarate (2OG) and Fe(II...		Lus10037429 [exp]	3.5	0.8049
AT3G59510			Leucine-rich repeat (LRR) fami...		Lus10027040 [exp]	5.0	0.8052
AT5G28237			Pyridoxal-5'-phosphate-depende...		Lus10008278 [exp]	6.0	0.7908
					Lus10035468 [exp]	11.8	0.7526
AT4G28050		TET7	tetraspanin7 (.1)		Lus10038964 [exp]	15.1	0.8244
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033500 [exp]	15.2	0.7865
					Lus10023556 [exp]	15.4	0.7994
AT4G30030			Eukaryotic aspartyl protease f...		Lus10007053 [exp]	15.6	0.7684
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012181 [exp]	16.7	0.7223

Compare expression of checked genes

Lus10002511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.