Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17630 337 / 3e-109 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G16860 256 / 1e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 248 / 2e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 246 / 3e-74 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G16610 238 / 3e-72 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G16835 236 / 9e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 238 / 6e-71 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 236 / 7e-71 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G50270 228 / 5e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G01510 225 / 6e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003790 [exp] 400 / 7e-134 AT1G17630 659 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10000597 [exp] 244 / 5e-77 AT4G16835 545 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 252 / 7e-77 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010998 [exp] 251 / 1e-76 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 239 / 3e-71 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013149 [exp] 237 / 3e-71 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028593 [exp] 234 / 1e-70 AT5G16860 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 234 / 2e-70 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 233 / 4e-70 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G041200 [exp] 268 / 5e-82 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G048800 [exp] 255 / 1e-77 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 256 / 2e-77 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G005400 [exp] 246 / 4e-75 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 247 / 1e-74 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.005G006400 [exp] 244 / 3e-74 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G104700 [exp] 244 / 4e-74 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G103600 [exp] 242 / 6e-74 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 241 / 8e-73 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 240 / 2e-72 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10002512 pacid=23166286 polypeptide=Lus10002512 locus=Lus10002512.g ID=Lus10002512.BGIv1.0 annot-version=v1.0 ATGGATGATGCACGCAAAGTGTTTGATAGAATGGGTGTGAGAACCACTTTGTCGTGGAATATGATGGTTTCTGGGTTTTCCTTTAATTGTGATGGTGCTG GTGCTCTTGAGATTTTCCAGAGGATGGAATATGAAGGTTTACAACCTAATATCGTGACATGGACATCTCTGATGTCGAGTCATGCTCGTTCTGGATTGTA TCTGGAAACTCTGACGTTATTTGGCTTGATGCGAAAGAGGGGAATCGGGGTGACTGCCGAAGTACTTGCTGTGATATTGTCTGTTTGTTCTGATCTGGGT GCATTTTGTGCGGGGAGATCCATACATAGTCATGTCCTGAAGGATGGTTTCAAAGATTATTTGTTTGTCAAACATGCACTTATATGTTTATATTGCAAGA GTGGCAATCCAACGGATGCTCGCAGCTTGTTCGACGAGATTGAAAACAAGAATATATGTCTTATCAGCGTGTGCAGAGTTGTCTGCACTGAATCTCGGCA AGGAAATCCATGGATACACCACAAGAAGCTTTATGAGCAACAATATACTGGTTCAAATGGTTTGATTGACATGTATACCAAATGTGGAAGCCTGAGAGAA GGGCATCTAGTATTCGAGAAACTTGAGAGGAAAGATCTGATTTCATGGAATTCCATGATCAAAGGATTTGGGATGCATGGATTTGGTCTCGATGCTCTAG ATACCTTCAATCATATGATTACTCGTGGCCATCAGCCAGATGGGATCACCTTTGTATCGGTTCTTTCTGCTTGTAGTCATGCCGGACTTGTTGATGAGGG TCGTTTGCTTTTTGATAAGATGATTAAAGACAACCTCGTTGAACTACAGATGGAGCACCACGCTTGCATGGTTGATCTACTTGGCCGTTCAGGGTTACTG GAAGAGGCAAGTGACGTTGTGAAGAATATGCCGATGGAACCTAATGCTTATGTATTGGGTGCACTTTTAAACTCATGTAGAATGCACAAAAATACTGTAC TTGCAGGAAATATTGCATCTCAAATGCTTAGCTTCACTTCCCAGACTACTTGGAGCTACATGTTACTGTCAAATATATATGCTGCTAGTGGTAGATGGGA GGATTCTGCAATAACCAGAGTCTCAGCGAGGAAAAAAGGCTTAAAGAAAACCCCTGGCGAGAGTTGGATTGAAGTAAACTAG
AA sequence Show only first row Show all	>Lus10002512 pacid=23166286 polypeptide=Lus10002512 locus=Lus10002512.g ID=Lus10002512.BGIv1.0 annot-version=v1.0 MDDARKVFDRMGVRTTLSWNMMVSGFSFNCDGAGALEIFQRMEYEGLQPNIVTWTSLMSSHARSGLYLETLTLFGLMRKRGIGVTAEVLAVILSVCSDLG AFCAGRSIHSHVLKDGFKDYLFVKHALICLYCKSGNPTDARSLFDEIENKNICLISVCRVVCTESRQGNPWIHHKKLYEQQYTGSNGLIDMYTKCGSLRE GHLVFEKLERKDLISWNSMIKGFGMHGFGLDALDTFNHMITRGHQPDGITFVSVLSACSHAGLVDEGRLLFDKMIKDNLVELQMEHHACMVDLLGRSGLL EEASDVVKNMPMEPNAYVLGALLNSCRMHKNTVLAGNIASQMLSFTSQTTWSYMLLSNIYAASGRWEDSAITRVSARKKGLKKTPGESWIEVN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17630			Pentatricopeptide repeat (PPR-...		Lus10002512 [exp]	0	1
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10017350 [exp]	2.0	0.8554
AT1G55800			Domain of unknown function (DU...		Lus10016346 [exp]	3.2	0.8509
AT3G10080			RmlC-like cupins superfamily p...		Lus10020631 [exp]	5.2	0.8397
AT1G80080		AtRLP17, TMM	TOO MANY MOUTHS, Receptor Like...		Lus10042458 [exp]	7.2	0.8182
					Lus10006808 [exp]	8.1	0.8153
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10002587 [exp]	9.5	0.7988
AT1G36390			Co-chaperone GrpE family prote...		Lus10042696 [exp]	11.2	0.7594
AT1G80080		AtRLP17, TMM	TOO MANY MOUTHS, Receptor Like...		Lus10026208 [exp]	14.1	0.7474
					Lus10008111 [exp]	17.0	0.7512
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10002516 [exp]	18.7	0.7418

Compare expression of checked genes

Lus10002512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.