Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13850 137 / 3e-39 AS2 LBD22 LOB domain-containing protein 22 (.1) AT1G72980 112 / 5e-30 AS2 LBD7 LOB domain-containing protein 7 (.1) AT3G47870 113 / 2e-29 AS2 ASL29, SCP, LBD27 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) AT5G63090 91 / 3e-22 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT1G65620 89 / 2e-21 AS2 AS2 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT2G30130 85 / 6e-20 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) AT3G27650 84 / 6e-20 AS2 LBD25 LOB domain-containing protein 25 (.1) AT1G31320 82 / 6e-19 AS2 LBD4 LOB domain-containing protein 4 (.1) AT5G66870 82 / 6e-18 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) AT3G26620 77 / 6e-18 AS2 LBD23 LOB domain-containing protein 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003789 [exp] 278 / 1e-94 AT3G13850 162 / 7e-49 LOB domain-containing protein 22 (.1) Lus10013510 [exp] 113 / 4e-30 AT3G13850 143 / 1e-41 LOB domain-containing protein 22 (.1) Lus10008629 [exp] 112 / 6e-29 AT3G47870 175 / 2e-52 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10033111 [exp] 111 / 1e-28 AT3G47870 194 / 5e-60 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10036665 [exp] 108 / 1e-27 AT3G47870 182 / 2e-55 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10031855 [exp] 91 / 3e-22 AT2G30130 220 / 4e-74 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10027676 [exp] 89 / 2e-21 AT5G63090 233 / 8e-79 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10039940 [exp] 89 / 2e-21 AT5G63090 236 / 5e-80 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10031285 [exp] 89 / 2e-21 AT2G30130 226 / 3e-76 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G196400 [exp] 159 / 1e-47 AT3G13850 184 / 3e-57 LOB domain-containing protein 22 (.1) Potri.003G039700 [exp] 160 / 4e-47 AT3G13850 184 / 6e-56 LOB domain-containing protein 22 (.1) Potri.015G066700 [exp] 126 / 7e-35 AT3G47870 191 / 2e-59 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Potri.012G072000 [exp] 122 / 3e-33 AT3G47870 180 / 7e-55 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Potri.006G228301 [exp] 98 / 7e-24 AT1G31320 111 / 1e-29 LOB domain-containing protein 4 (.1) Potri.018G052700 [exp] 94 / 3e-23 AT3G13850 85 / 1e-19 LOB domain-containing protein 22 (.1) Potri.001G345700 [exp] 89 / 6e-22 AT3G27650 208 / 5e-70 LOB domain-containing protein 25 (.1) Potri.012G083500 [exp] 90 / 9e-22 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.015G082200 [exp] 90 / 9e-22 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.005G097800 [exp] 87 / 3e-21 AT1G31320 193 / 6e-64 LOB domain-containing protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10002513 pacid=23166288 polypeptide=Lus10002513 locus=Lus10002513.g ID=Lus10002513.BGIv1.0 annot-version=v1.0 ATGAGCAACAATACATCTCCTATTTCAATCACCACAACCACCAGTAGCAATACTAATACCAATACCAATACCAATAGCAGCAACAAGAACAACAACAACA TCTCTAGAACTGCCAACGGCGGCACCACCCCTGCCTGCGCTTCATGCAAATACCAACGTAGAAAGTGCGACCCTGATTGCATTCTCGCCCCCTACTTCCC CCACGATTGCCAACGTCAATTCCTCAACGCCCACAAGCTTTTTGGTGTCAGGAAGATCACCAAGATCATCGAGAACCTTGTGACGCAGGCTCATAAGGAC GAGGCTATGCGCTCCATCATTTTCCAGTCTGATGTTCGAGCCAATGACCCCGTTGGTGGCTGCTACCGCATCGTTCTCGAACTTCAACGCCAGATTAACT ACGCACAGGCCGACCTTGATCTTCTCCTTCACCACCTCGCCATATATCAGCAACAACAACAACAGAAACATCATCAAAATCATCATCAACAACAAGATCA AACTACGATCGACACCAACATTGATTCTGCAATGATGGCAGCTGTTGGGTGCATGGATGTTTACACTGATCCAATGTTGTTGCAGTTTCATTATTCCCCG CAGCAGCAGCCACAACAACAGCCCGATCATGAAGAACAACAGCAGCAACATCACCACCACCATCACCACCATCATCATCAAAACCAACAACAACACCATC AGCTTCATGGCTATGCTGTTGAAGACACATTGCAAGATAGCGACAGCGTCAATTCCTGGGGGATGGCTGCTGGTGGCTGA
AA sequence Show only first row Show all	>Lus10002513 pacid=23166288 polypeptide=Lus10002513 locus=Lus10002513.g ID=Lus10002513.BGIv1.0 annot-version=v1.0 MSNNTSPISITTTTSSNTNTNTNTNSSNKNNNNISRTANGGTTPACASCKYQRRKCDPDCILAPYFPHDCQRQFLNAHKLFGVRKITKIIENLVTQAHKD EAMRSIIFQSDVRANDPVGGCYRIVLELQRQINYAQADLDLLLHHLAIYQQQQQQKHHQNHHQQQDQTTIDTNIDSAMMAAVGCMDVYTDPMLLQFHYSP QQQPQQQPDHEEQQQQHHHHHHHHHHQNQQQHHQLHGYAVEDTLQDSDSVNSWGMAAGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Lus10002513 [exp]	0	1
AT5G49130			MATE efflux family protein (.1...		Lus10009788 [exp]	4.8	0.8317
					Lus10026092 [exp]	14.3	0.8081
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10006308 [exp]	16.1	0.8116
AT1G51640		ATEXO70G2	exocyst subunit exo70 family p...		Lus10035750 [exp]	16.1	0.8134
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Lus10038370 [exp]	17.5	0.8239
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10027369 [exp]	20.7	0.8005
AT2G39530			Uncharacterised protein family...		Lus10031874 [exp]	20.8	0.8000
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10026112 [exp]	21.9	0.7961
AT2G31110		TBL40	TRICHOME BIREFRINGENCE-LIKE 40...		Lus10000466 [exp]	23.6	0.8164
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10039364 [exp]	24.0	0.8029

Compare expression of checked genes

Lus10002513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.