Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40470 301 / 7e-95 RNI-like superfamily protein (.1) AT4G15475 67 / 2e-11 F-box/RNI-like superfamily protein (.1) AT5G23340 61 / 1e-09 RNI-like superfamily protein (.1) AT5G27920 55 / 1e-07 F-box family protein (.1) AT5G01720 52 / 1e-06 RNI-like superfamily protein (.1) AT2G25490 49 / 9e-06 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT1G77000 43 / 0.0006 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022269 [exp] 543 / 0 AT5G40470 265 / 2e-83 RNI-like superfamily protein (.1) Lus10012764 [exp] 75 / 2e-13 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10034013 [exp] 62 / 2e-09 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10040998 [exp] 58 / 1e-08 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10002913 [exp] 56 / 7e-08 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002014 [exp] 55 / 2e-07 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10013444 [exp] 52 / 7e-07 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10001264 [exp] 50 / 5e-06 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10041087 [exp] 48 / 1e-05 AT3G07550 417 / 2e-145 RNI-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G069800 [exp] 462 / 1e-157 AT5G40470 295 / 2e-94 RNI-like superfamily protein (.1) Potri.006G238300 [exp] 60 / 2e-09 AT5G23340 98 / 1e-22 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 55 / 1e-07 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 53 / 5e-07 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.003G179100 [exp] 50 / 5e-06 AT1G80630 494 / 1e-169 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 50 / 6e-06 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 49 / 1e-05 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.018G027700 [exp] 49 / 1e-05 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G022600 [exp] 47 / 3e-05 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.006G254100 [exp] 46 / 7e-05 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002515 pacid=23146210 polypeptide=Lus10002515 locus=Lus10002515.g ID=Lus10002515.BGIv1.0 annot-version=v1.0 ATGGATGAGATGCTCTGCGATGAACTACTACAAGAAATCTTCACCAAAATCCTACCTGGGAATCATCCTCCCTCGTCTTCTTCTTCTTCTTCTTCTTCTT CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTATCAATTCCTCTAGTTTCCAAGCGGTGGCTTCATCTCTACAGAGCTTCAAAGACC TCTCTGTCCCTCAGAATTACTCTTCTCAACCACCACCACGCAAATGATCCCTCCGCCACCGCCCTGTTTCAGTCCCTATCTTCTCTTCTCGCCAACTACC CTTTCCTCTCCTCCCTCTCCATCCTCCCTTCCGATGATCCTTCTTCTTCTTCACCTTCCCGCTCTCTGGATTTCAACGATCGTTTCCTCTTTTTAGTTTC CTCTCTATGCTTCAAACTCCACAACCTCAGGCTCCTCAACGCTCCTGTTTCTTCTCTTTCTCTTCGCTCCTTCTCCAATTCATGTCCCCTCCTTTCCTCC CTCACAGTTTCCATATCTAGACCCTTGGATTTCCACTGGATTGCTTGGTTTTCTTCTTTGAAAGATTTATCCGTCTATGTCTGCGACGGTGAAGGAGTAA TTGGCCGTCGGCAGTTTGATGATTACACAACAAATGAAGAAATTGATGCCGAATTAGGGTTGGAAAGCGTCTCGTTTACGGGAATCGGAAGAGACGATTC CGGAATTGGTTATTTATGGAGGAGATGCAAAAGGCTCAAGAAACTAAGGCTTACGAGCTGTGAAGGTATCGGCGATGGTGGCTCTTTCTGCTCTTTTGTT AATTGCTTGAAGTCTCTCCAAGAATTGGAGCTACGAACTTGTAGGAACATAGCCGATTTGGTACTTTTCAGACTCGCTGAGAATTCCGCTTCCTTAGTTT CTCTACTGCTTTACGACGGCGGGAGTAGAGACGGATTACTTCATTTCCTTACCAACTCCAAATGTAGCACCAATCTCTCCAAGCTTGATTTCCGATTACC TTTGGACCTAAGCAACCACCATCTCTCAGCTATTGCAGTAAATTTCACAAGTCTCAAAACTCTGAGGCTCCAGAGTTGCTGTCTTGTGACAGGTGAAGGA CTCAAGGCTCTTGGAATCGCCATCAGCTCCGGTCTTGAGGAATTGGCGCTGATAAACTGTGATGTTGTTGAGAGAGAATCAGGGTTGCTGGCCACGTTGG GGCAGAAGCTGAAGCAGCTGAGGAGACTGGATTTGTCCTATAACGAGTACCTGTTTGATAAGGAGTTTGTTGGGATGTTAGCCTCTTGTACCAATTTGAT TGAGCTGAAACTGAGAGGCTGCAAGGGGCTTACTGGTACGGCAGTGACGTCTATGTTTAGGAGTTGCAAAGGATTGGAGAGTGTTGATGTTGTGCATTGT GATGGGATTGGTTGTGGTGATGTTGAGGTGTTATTGCTCAACTCCCATCGGCTGAGGCGATTCCAGGTAGAGGAGAAGAAGCTCTCCGGTGTCGCGAGGG CGTGGGCGGATGGAAGGTGCATCGAAGTTGTTGCTTGA
AA sequence Show only first row Show all	>Lus10002515 pacid=23146210 polypeptide=Lus10002515 locus=Lus10002515.g ID=Lus10002515.BGIv1.0 annot-version=v1.0 MDEMLCDELLQEIFTKILPGNHPPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSLSIPLVSKRWLHLYRASKT SLSLRITLLNHHHANDPSATALFQSLSSLLANYPFLSSLSILPSDDPSSSSPSRSLDFNDRFLFLVSSLCFKLHNLRLLNAPVSSLSLRSFSNSCPLLSS LTVSISRPLDFHWIAWFSSLKDLSVYVCDGEGVIGRRQFDDYTTNEEIDAELGLESVSFTGIGRDDSGIGYLWRRCKRLKKLRLTSCEGIGDGGSFCSFV NCLKSLQELELRTCRNIADLVLFRLAENSASLVSLLLYDGGSRDGLLHFLTNSKCSTNLSKLDFRLPLDLSNHHLSAIAVNFTSLKTLRLQSCCLVTGEG LKALGIAISSGLEELALINCDVVERESGLLATLGQKLKQLRRLDLSYNEYLFDKEFVGMLASCTNLIELKLRGCKGLTGTAVTSMFRSCKGLESVDVVHC DGIGCGDVEVLLLNSHRLRRFQVEEKKLSGVARAWADGRCIEVVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40470			RNI-like superfamily protein (...		Lus10002515 [exp]	0	1
AT4G03030			Galactose oxidase/kelch repeat...		Lus10024874 [exp]	1.0	0.9028
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10041353 [exp]	2.4	0.9005
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10023182 [exp]	4.9	0.8817
AT3G63220			Galactose oxidase/kelch repeat...		Lus10042607 [exp]	5.0	0.8728
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032223 [exp]	5.7	0.8790
AT3G52105			unknown protein		Lus10011321 [exp]	6.7	0.8520
AT5G40470			RNI-like superfamily protein (...		Lus10022269 [exp]	9.5	0.8597
AT4G25672		CPuORF12	conserved peptide upstream ope...		Lus10027512 [exp]	10.4	0.8601
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10031680 [exp]	11.0	0.8331
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10036394 [exp]	11.2	0.8099

Compare expression of checked genes

Lus10002515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.