Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40480 503 / 4e-163 EMB3012 embryo defective 3012 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022271 [exp] 801 / 0 AT5G40480 1883 / 0.0 embryo defective 3012 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G345100 [exp] 549 / 6e-180 AT5G40480 2192 / 0.0 embryo defective 3012 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002516 pacid=23146206 polypeptide=Lus10002516 locus=Lus10002516.g ID=Lus10002516.BGIv1.0 annot-version=v1.0 ATGTTGAGCTCCATTGCTCCCTTTGATGGTCGGAAAGAGACTGCAGTTTATGCTACTGATACACAAACTGGGGTTGTAATTCGCTGCAAGGTTTTCATTG ATAAGATCTCTAGAATTCAGATCTTTCATAACTCTATTAAACTGAATTTAGATGGGCTTGCTACACCTCGAGTTCACGCATTTGATGGTGAAGATAATGT GTTTTCATCATTAGTTGGCATACAGTTCATGTGGAAATTCATGCCTGAACATCTTGGGTCTCATCATCTCGTCCATGTTCCTCTCAAGCATTCTCCTCTG AGCGATTGTGGTGGATTGTGTGCTGCATTGAATTTCAGGATAAAGCTGGAAGATGATGGTGTTTTCTCAGATCTGTGCGTTGTTAAAGGGTTGGGGATCA GACATGAGACTGTATCAGTCCAAATGCTTGAACCTCAACATGAGAACATGGCTGATAAGATCGTGTTTACTGTAGCGGAGGCTATGTCAGATGACCCCCC TTCTCCTGTATTTGTTCTAGTTGGCGCTGCTCTACAATATAATCTTGAAGTCATTAAGGGAAATGTCCCACAAGTGGTGGCAGTACCATCTCCGCATCAT TACTGGTCTGTCTCCAACACGTCGGTTGCTGAAGTAGAGCGAATGCAGGGTTATGCCCGTGCTCTGAGCTTGGGAGTAACATCAATTGTTGTAGAAGATA AACGAATTGCTGGTCATATACAGCTTTCCTCACTCAATGTGGTGGTTCCAGAAAGATTATATCTGTACATAGTGCCACTATCCGTTTCTGGTGACCCTGC AGATGGAGTGAAACCCGTCTCGTCTGGGTCTCCATGGTATGTGGTTTCTGGACGTAGTTATCTTAAGAAAGTGAAGGTTTTCTCTGGTGGGCCTGATGCA CAAGAGATCTACATTACAGAGAAAGACAAAATTACATGGTTCGATGGGTCAGCTGATTACTGGACTACATTGTTGCCATCACCTGCTAGTGTGGTTGAAC ATGGTTGGTGGAATTATAAAGTCATCAATGTAACTTCACCGGGGTTTGGAGAACTGACAGCATCATTGACTTTTTTCCTTGAGGATCAGGGAAGAGAGCA GGTCCTGACAGTTGTCCAAAAAGTTATAATTTGTGATCAAGTGAAATTCACTTTAGACGGTGAAGAGGTATCTCAAGTTGTCCAACTTCCGTGGGCCCCT GCAGTTTACCAAGAAGTGGAGCTGAAGGCTGTGGGAGGTTGA
AA sequence Show only first row Show all	>Lus10002516 pacid=23146206 polypeptide=Lus10002516 locus=Lus10002516.g ID=Lus10002516.BGIv1.0 annot-version=v1.0 MLSSIAPFDGRKETAVYATDTQTGVVIRCKVFIDKISRIQIFHNSIKLNLDGLATPRVHAFDGEDNVFSSLVGIQFMWKFMPEHLGSHHLVHVPLKHSPL SDCGGLCAALNFRIKLEDDGVFSDLCVVKGLGIRHETVSVQMLEPQHENMADKIVFTVAEAMSDDPPSPVFVLVGAALQYNLEVIKGNVPQVVAVPSPHH YWSVSNTSVAEVERMQGYARALSLGVTSIVVEDKRIAGHIQLSSLNVVVPERLYLYIVPLSVSGDPADGVKPVSSGSPWYVVSGRSYLKKVKVFSGGPDA QEIYITEKDKITWFDGSADYWTTLLPSPASVVEHGWWNYKVINVTSPGFGELTASLTFFLEDQGREQVLTVVQKVIICDQVKFTLDGEEVSQVVQLPWAP AVYQEVELKAVGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10002516 [exp]	0	1
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10025873 [exp]	3.0	0.8565
AT5G58160			actin binding (.1)		Lus10024450 [exp]	3.2	0.8264
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10025872 [exp]	9.4	0.7821
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029658 [exp]	9.5	0.8084
AT3G10080			RmlC-like cupins superfamily p...		Lus10020631 [exp]	11.8	0.7926
AT4G11720		HAP2, GCS1	GENERATIVE CELL-SPECIFIC 1, ha...		Lus10024496 [exp]	15.4	0.8084
AT5G53870		AtENODL1	early nodulin-like protein 1 (...		Lus10018606 [exp]	16.2	0.8143
					Lus10008111 [exp]	16.7	0.7695
AT5G25310			Exostosin family protein (.1)		Lus10001917 [exp]	17.7	0.6990
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029379 [exp]	18.2	0.7478

Compare expression of checked genes

Lus10002516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.