Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27580 489 / 4e-169 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT4G26610 446 / 3e-153 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G47750 447 / 2e-152 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT5G55910 439 / 9e-151 D6PK D6 protein kinase (.1) AT5G40030 397 / 2e-134 Protein kinase superfamily protein (.1) AT2G44830 405 / 4e-134 Protein kinase superfamily protein (.1) AT1G79250 372 / 1e-123 AGC1.7 AGC kinase 1.7 (.1.2) AT3G12690 364 / 2e-120 AGC1.5 AGC kinase 1.5 (.1.2.3) AT3G52890 372 / 1e-119 KIPK KCBP-interacting protein kinase (.1.2) AT1G16440 356 / 2e-118 RSH3 root hair specific 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022272 [exp] 631 / 0 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10039105 [exp] 449 / 2e-153 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 447 / 1e-152 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10016629 [exp] 444 / 3e-151 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10042911 [exp] 411 / 1e-139 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10032185 [exp] 397 / 1e-133 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1) Lus10014501 [exp] 397 / 1e-133 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1) Lus10006273 [exp] 372 / 8e-122 AT3G52890 604 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10022534 [exp] 367 / 1e-121 AT5G47750 709 / 0.0 D6 protein kinase like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G344600 [exp] 542 / 0 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.016G004900 [exp] 465 / 3e-159 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 464 / 4e-159 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.017G075400 [exp] 425 / 5e-145 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.014G047500 [exp] 432 / 8e-145 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.002G137700 [exp] 430 / 5e-144 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.010G175900 [exp] 386 / 1e-128 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.006G114900 [exp] 392 / 9e-127 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.008G080600 [exp] 380 / 1e-126 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2) Potri.009G146700 [exp] 388 / 2e-126 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10002518 pacid=23146197 polypeptide=Lus10002518 locus=Lus10002518.g ID=Lus10002518.BGIv1.0 annot-version=v1.0 ATGGAGGACTCCTCATTGGTTGATGGAGGAACCAACACCAAAAAGTCAGCTATGAACACTAACAACAGCCAGATGAAACTCCAAGGAGCTTCCACATCCT ACTACAATGGTTCTTCTATGGCTCATGCTATGAACACTGCTTCCCAATCCGGTGGATTTGAAATTTCCAAAACTGCCAAACAGTTTTACACTTCCAGCAA GGACCACCCTGGCTCCATGGCATCATCTTCTGCTGCAAACAAGGATTTGGTTCAGAAATCCACTCATGATGTTGAGAGTTCTACTTCAAGTGGCTCAGTC GAATCGGGATTTCGTCCGTTAAATGACATGCCTTTATTACCCTCCTCCTCTCAGCCAGTCGGCTATAGTGTTGGAAGCCCTTCCAATAGCATTTACACGC CCACTTTGTATGCAGAGGCTAAAGATAGCTTCACCAACACAGAGGTTAGTGAAGAAGTTGAGAAGTCTATCGAGAGTTGCAAAGTGAGCAACTCTGGTGG AGACCTGCATTCACTCCGCCAAAGGCAACCTGGGAAATACTTTCCTGAGCAAGCAGCACGATTTTACGTGGCAGAAGTTCTCCTTGCTATGGAGTACCTG CACATGCTGGGGATCATATACAGAGACCTTAAACCAGAAAACGTCTTAGTAAGGGAAGATGGCCACATAATGCTCTCTGACTTTGACCTCTCCCTGAGAT GTGCTGTATGCCCAACTCTTGTCAGATCATCAAAACCAAATGTAGCAACGGAGTCCAAAAGCTCAGGCTACTGTGCACAGCCAGCTTGCATGGAACCAAC GTGCGTAATACAGCCGGATTGCCTCAAACCAGGTTGCTTTACGCCTCGATTCATGTCGAGCAGCAAGCAGAAGAAAGAGAAGAAGAACAAGAGCAACAAA AACAACAGCAAGGGAAGAAATGAGGTGAGTCATCAAGTGAACCCACTACCCGAGCTGGTTGCAGAGCCAACAAATGCGAGATCAATGTCGTTCGTGGGGA CACACGAGTACTTAGCACCGGAGATCATCAAAGGAGAAGGACACGGAAGTGCTGTGGACTGGTGGACGTTCGGGATATTTCTGTACGAGTTGTTGTTTGG GAAGACACCGTTCAAGGGGGCGGGGAACCGTGCAACGCTGTTCAATGTGATCGGGCAGCCACTTAAGTTTCCAGAATGTCCGAGTGTGAGCTTTGCCGCT AGAGATTTGATAAGAGGGTTGCTAGTGAAGGAGCCGCAACATAGGCTAGCGTACAGGAGGGGAGCAACTGAGATAAAGCAGCATCCTTTCTTTCAGAGTG TGAACTGGGCTTTGATAAGATGCACTAATCCCCCGGATGTCCCCAGACAAGCAATGGTGGAGATATTGGCAGCTGCGGCTGCTACTTCTAGTGATAATGT AGGGAGTGATGTAGATGTGAAGCCTTGCGGTAATTATTTGGACATTGATTTCTTCTGA
AA sequence Show only first row Show all	>Lus10002518 pacid=23146197 polypeptide=Lus10002518 locus=Lus10002518.g ID=Lus10002518.BGIv1.0 annot-version=v1.0 MEDSSLVDGGTNTKKSAMNTNNSQMKLQGASTSYYNGSSMAHAMNTASQSGGFEISKTAKQFYTSSKDHPGSMASSSAANKDLVQKSTHDVESSTSSGSV ESGFRPLNDMPLLPSSSQPVGYSVGSPSNSIYTPTLYAEAKDSFTNTEVSEEVEKSIESCKVSNSGGDLHSLRQRQPGKYFPEQAARFYVAEVLLAMEYL HMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVCPTLVRSSKPNVATESKSSGYCAQPACMEPTCVIQPDCLKPGCFTPRFMSSSKQKKEKKNKSNK NNSKGRNEVSHQVNPLPELVAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGAGNRATLFNVIGQPLKFPECPSVSFAA RDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCTNPPDVPRQAMVEILAAAAATSSDNVGSDVDVKPCGNYLDIDFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27580		D6PKL3, ATPK7	D6 PROTEIN KINASE LIKE 3, Prot...		Lus10002518 [exp]	0	1
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10018774 [exp]	5.1	0.9081
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10036144 [exp]	10.0	0.9041
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10040484 [exp]	13.2	0.9133
AT4G11050		ATGH9C3	glycosyl hydrolase 9C3 (.1)		Lus10033956 [exp]	16.0	0.8534
AT3G61260			Remorin family protein (.1)		Lus10030379 [exp]	19.7	0.8972
AT5G27780			SAUR-like auxin-responsive pro...		Lus10023969 [exp]	20.2	0.8926
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10014356 [exp]	21.4	0.8957
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10005557 [exp]	22.8	0.8861
AT4G12690			Plant protein of unknown funct...		Lus10006223 [exp]	24.1	0.9075
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10037200 [exp]	24.6	0.8521

Compare expression of checked genes

Lus10002518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.