Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27570 280 / 3e-91 Sucrase/ferredoxin-like family protein (.1) AT5G40510 262 / 4e-85 Sucrase/ferredoxin-like family protein (.1) AT4G26620 252 / 1e-79 Sucrase/ferredoxin-like family protein (.1) AT5G55900 228 / 9e-71 Sucrase/ferredoxin-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022274 [exp] 520 / 0 AT5G40510 358 / 4e-123 Sucrase/ferredoxin-like family protein (.1) Lus10016627 [exp] 239 / 2e-74 AT4G26620 489 / 8e-172 Sucrase/ferredoxin-like family protein (.1) Lus10022532 [exp] 221 / 1e-67 AT4G26620 469 / 1e-163 Sucrase/ferredoxin-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G344400 [exp] 342 / 3e-115 AT5G40510 358 / 2e-122 Sucrase/ferredoxin-like family protein (.1) Potri.001G369300 [exp] 249 / 2e-78 AT4G26620 515 / 0.0 Sucrase/ferredoxin-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06999 [flax] [poplar] Suc_Fer-like Sucrase/ferredoxin-like
Representative CDS sequence Show only first row Show all	>Lus10002520 pacid=23146207 polypeptide=Lus10002520 locus=Lus10002520.g ID=Lus10002520.BGIv1.0 annot-version=v1.0 ATGGCTGACTCAGACCTTGCTGCTGTTCCTACTCTTCCCGTGGAGGATGTCGTCGCTAACGACGATGAGAAGTTTGGGTTCAAGCGGTCGGAGATGTACA GGGAAACACTCGCCGGAACCGTGGGTCGCTACGACCGCCACGTCTTCCTCTGCTACAAGAATCCAGAGGCTTGGATGCCTCGCGTTGAGGACTCCGAAAC CGATCCTCTTCCTAAGCTGCTCGCCTCTGCTATACGAACACGCAAGAGCGAAATCACTGTCAAGACCAAGGTTACCACGTGCGAGTCACGTGAGGGGACG GGGTTTGAGGAAGGAGACGTGCTCATATTTCCTGATCTGATCAAGTACAAGGGTTTGAAGGACTCGGATGTTGATAGTTTCGTCGATGATGTTCTTGTGA ATGGAAAACCATGGGCTTCTGGGCTGCAGGAGACGTTAACTGGTTCACACATATTTGTGTGTGCTCATGGGAGCCGTGATAAGAGATGTGGTGTTTGTGG CCCAGTTCTAATGGAGAAGCTCAACGAGGGTATTGAATCACGAGGGCTGAAAGATCAGGTGTTTGTCAGTGCTTGCTCACATATTGGAGGACATAAGTAT GCTGGCAATGTCATTGTTTACAGATCAGACTCAGATGGCAAAGTTACCGGCCATTGGTTTGGCTATGTTACTCCTGAGGATGTGCCTGAGATTCTGGATG AGCATATTGGGAAAGGGGAGGTTTTAGGCTCCCAAGTCTTTACACTGATTAATGCCTGGAATGGCCTTGCTGCCATAGTTGTGGTGCCTGATATTCGTCG TTGGATGCTTGATATTTCCCAATTCCCATGTGCTGAGATGTCAATTTTCATTAGCATGGGCCAACTTGGGGAACCCGTTGAAGTTGAAAGCTTTCCAGAA CAGAAGGTTCCTAATGGAGAAGCCGCAAAAGAAGTGAAGAACCAAGAAGAAGAGAAGACGAGTGAGGTGGTGAAGACGGATAGTTTCGTTGGGTGTTGCC AGGAAGGTGTGAATGGAGTTTCATGTTGCAGAGAAGTGAGTGAAGAAAGTAAGGAGAAGTCAGGAAAGAAGGGGTGCGGTGGGAAATTGTCAAGCTGGGT AGGATCATTGGATCAGAGTGATGTGCTTGCTGGAGTTGCTGTGGCGGGAGCAGTAGCAACCATTGCGGTAGCTTATAGCTTCTACCGAAAGTCTGCCTGA
AA sequence Show only first row Show all	>Lus10002520 pacid=23146207 polypeptide=Lus10002520 locus=Lus10002520.g ID=Lus10002520.BGIv1.0 annot-version=v1.0 MADSDLAAVPTLPVEDVVANDDEKFGFKRSEMYRETLAGTVGRYDRHVFLCYKNPEAWMPRVEDSETDPLPKLLASAIRTRKSEITVKTKVTTCESREGT GFEEGDVLIFPDLIKYKGLKDSDVDSFVDDVLVNGKPWASGLQETLTGSHIFVCAHGSRDKRCGVCGPVLMEKLNEGIESRGLKDQVFVSACSHIGGHKY AGNVIVYRSDSDGKVTGHWFGYVTPEDVPEILDEHIGKGEVLGSQVFTLINAWNGLAAIVVVPDIRRWMLDISQFPCAEMSIFISMGQLGEPVEVESFPE QKVPNGEAAKEVKNQEEEKTSEVVKTDSFVGCCQEGVNGVSCCREVSEESKEKSGKKGCGGKLSSWVGSLDQSDVLAGVAVAGAVATIAVAYSFYRKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40510			Sucrase/ferredoxin-like family...		Lus10002520 [exp]	0	1
AT1G05590		HEXO2, ATHEX3	BETA-HEXOSAMINIDASE 3, beta-he...		Lus10030348 [exp]	1.0	0.7717
AT2G37660			NAD(P)-binding Rossmann-fold s...		Lus10024383 [exp]	4.9	0.7377
AT5G16450			Ribonuclease E inhibitor RraA/...		Lus10026835 [exp]	6.2	0.7453
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Lus10037491 [exp]	12.4	0.7393
AT4G19950			unknown protein		Lus10038358 [exp]	16.0	0.7655
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Lus10006497 [exp]	18.2	0.7277
					Lus10042010 [exp]	25.2	0.7450
AT3G16190			Isochorismatase family protein...		Lus10006833 [exp]	31.4	0.7293
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10038868 [exp]	33.5	0.6761
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Lus10031394 [exp]	34.3	0.7086

Compare expression of checked genes

Lus10002520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.