Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14510 239 / 7e-77 ARM repeat superfamily protein (.1) AT4G12710 170 / 3e-49 ARM repeat superfamily protein (.1) AT3G03440 121 / 3e-31 ARM repeat superfamily protein (.1) AT3G01400 93 / 3e-21 ARM repeat superfamily protein (.1) AT3G54790 89 / 3e-19 ARM repeat superfamily protein (.1.2) AT2G23140 88 / 9e-19 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G58680 84 / 5e-18 ARM repeat superfamily protein (.1) AT1G24330 82 / 8e-17 ARM repeat superfamily protein (.1) AT2G25130 81 / 8e-17 ARM repeat superfamily protein (.1) AT1G67530 77 / 2e-15 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022275 [exp] 531 / 0 AT5G14510 290 / 1e-96 ARM repeat superfamily protein (.1) Lus10041090 [exp] 167 / 1e-48 AT4G12710 411 / 5e-143 ARM repeat superfamily protein (.1) Lus10036415 [exp] 165 / 4e-45 AT2G04280 828 / 0.0 unknown protein Lus10033593 [exp] 127 / 1e-32 AT3G03440 395 / 4e-135 ARM repeat superfamily protein (.1) Lus10017635 [exp] 116 / 3e-29 AT3G03440 409 / 2e-141 ARM repeat superfamily protein (.1) Lus10007738 [exp] 93 / 4e-21 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10039047 [exp] 94 / 6e-21 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10024899 [exp] 94 / 1e-20 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10022919 [exp] 88 / 8e-19 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G344200 [exp] 317 / 3e-107 AT5G14510 310 / 5e-105 ARM repeat superfamily protein (.1) Potri.014G170100 [exp] 181 / 1e-53 AT4G12710 422 / 3e-147 ARM repeat superfamily protein (.1) Potri.004G088800 [exp] 129 / 3e-34 AT3G03440 389 / 7e-134 ARM repeat superfamily protein (.1) Potri.017G128100 [exp] 122 / 1e-31 AT3G03440 380 / 2e-130 ARM repeat superfamily protein (.1) Potri.005G225400 [exp] 97 / 8e-22 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 94 / 8e-21 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.005G144700 [exp] 86 / 3e-18 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 84 / 2e-17 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.016G010800 [exp] 81 / 1e-16 AT4G16490 521 / 0.0 ARM repeat superfamily protein (.1) Potri.014G016400 [exp] 79 / 2e-16 AT3G01400 557 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF05804 [flax] [poplar] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Lus10002521 pacid=23146204 polypeptide=Lus10002521 locus=Lus10002521.g ID=Lus10002521.BGIv1.0 annot-version=v1.0 ATGGAGGATTATGTGTTGCAGACTCTGTTCCATGGAGGAAGAGATGCTCAAATTGAGGCTGCTACCCAGGTTGGAAAGCTCAGCACTAAGTCTAGGAGGA CATTGTTTGAGAATGGAGTCATTCTTCCTTTGATCTCCATGCTTCAGTCTCAGGATTATGAGCCCATTGAAGCTTCCCTTTTCGCCTTGCTCAGCATTGC CTTTGGCAGTGAAAGGAACAAGAGAGGAATGGTGAAATCAGGGGTGGTGGAGGTGTTACTTCAGCTTCTCCAATGGCGGAATGAGTCGTTAACAGAGCTC ACAGTGGCAGCCTTACTCATCCTATCCTCTTGTGCACCAAACAAGCCATTGATCATAACCTCAGGAGCAATCAACCACCTTGTTCAATTACTAACCACCA ACACAACAGTCCAAACAAAGATGGATGCTTTAACCACACTCCACAACCTCTCAACCTGCAGCCAAGCAATCCCACCAATTGTTTCATCAGGGCTAGTCTT CACACTGCTCCAACTAACCACGACAACCCACCAAACACTGGTGGAGAAGGCAACGGCACTGCTGGAAGCTGTTGCGATTTTGTCAGAGACGGCAGTGGTC CAGGCGTCCGGAGGGATCCAGGCGTTGGTGGAGATGATTGAGGAAGGGTCGTCCCGACAGTTGAAAGAGCATGCAGTTGGGGTACTGCTGCTGATATGCC AGAGCTGCAGGGATAAGTACAGAGAGATGATATTGAGAGAAGGAGCCATGCCTGGGCTGCTGCAGCTGAGTGTGGATGGGACATGGAGGGCTAGGAATCT GGCTCAGGAGCTGCTGCTTCTTCTGAGGGATTGTGAGGGTTATGGGTCCAGAGGGAAGCAGTGGAAACATGAGATGGTTGAACGGATAATGCAAGAGATC GACGCACAAGGGGATGATGATGATGATGATAATCATAATGAGCAAGTTATAGGGAGTAGAAGTAGTAGTAGCAGTACAAGTAGAACTACACTGAGATTAG TGGAAGAGATGATTGCCAAACTTACTACCTGA
AA sequence Show only first row Show all	>Lus10002521 pacid=23146204 polypeptide=Lus10002521 locus=Lus10002521.g ID=Lus10002521.BGIv1.0 annot-version=v1.0 MEDYVLQTLFHGGRDAQIEAATQVGKLSTKSRRTLFENGVILPLISMLQSQDYEPIEASLFALLSIAFGSERNKRGMVKSGVVEVLLQLLQWRNESLTEL TVAALLILSSCAPNKPLIITSGAINHLVQLLTTNTTVQTKMDALTTLHNLSTCSQAIPPIVSSGLVFTLLQLTTTTHQTLVEKATALLEAVAILSETAVV QASGGIQALVEMIEEGSSRQLKEHAVGVLLLICQSCRDKYREMILREGAMPGLLQLSVDGTWRARNLAQELLLLLRDCEGYGSRGKQWKHEMVERIMQEI DAQGDDDDDDNHNEQVIGSRSSSSSTSRTTLRLVEEMIAKLTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14510			ARM repeat superfamily protein...		Lus10002521 [exp]	0	1
AT5G47800			Phototropic-responsive NPH3 fa...		Lus10038763 [exp]	2.0	0.8946
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10014123 [exp]	2.8	0.8443
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10013208 [exp]	19.5	0.8389
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10035694 [exp]	19.6	0.8288
AT3G62110			Pectin lyase-like superfamily ...		Lus10009972 [exp]	26.2	0.8276
AT4G13950		RALFL31	ralf-like 31 (.1)		Lus10016646 [exp]	30.7	0.7997
AT3G06145			unknown protein		Lus10004420 [exp]	31.2	0.7817
AT3G13130			unknown protein		Lus10004415 [exp]	32.9	0.8310
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10029129 [exp]	34.2	0.8319
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10041481 [exp]	38.3	0.8255

Compare expression of checked genes

Lus10002521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.