Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40530 358 / 2e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022276 [exp] 464 / 1e-166 AT5G40530 354 / 4e-123 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G344000 [exp] 395 / 3e-140 AT5G40530 377 / 7e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05148 [flax] [poplar] Methyltransf_8 Hypothetical methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10002522 pacid=23146198 polypeptide=Lus10002522 locus=Lus10002522.g ID=Lus10002522.BGIv1.0 annot-version=v1.0 ATGAACGAAGCAAAGAACAGAAAACGCAAAAGAAGAGGAGGAAAGCATGCCAACAAACAGAAGAATAACGAAATCACCTTCCCAAAACAATCTCCAAGTT CACAAGTTGATGCTCCTCCTAAGCGGCCCAAACCGTCGTCGTCGTCTTCTTTCCTCGACAAGATGAAAGCCAGATTGTCTGGGGGCCATTTCAGAATGCT TAACGAAAAGCTCTACACTTGCACTGGAGGAGAGGCTTTTAACTACTTCAAAGAAGATCCATCCTTGTTTAATATGTATCATACCGGGTATCAAGAACAA ATGTCACACTGGCCTGAGCAGCCTGTAAAAGTAATCATAAATTGGCTAAAAAGTCACAGCCCTTCTTTTGTCGTTGCAGATTTCGGTTGTGGAGATGCAC GCCTAGCGAGAAATGTGAAGAATAAGGTGTTCTCTTTCGATCTCGTGTCCAACGATCCTTCGGTGATTGCGTGTGATATGTCAAAACTACCCCTTGATTC TTGCGCTGTAGATGTAGCTGTATTTTGTCTTTCACTGATGGGGACTGATTATCCGAGTTACCTCAAGGAAGCACACCGGGTGCTCAAGCAAAGTGGTTGG CTTTTGATAGCAGAGGTGAAGAGTAGGTTTGATCCAACTACTGGAGGGGCAGACCCAAATAAGTTCTTAAAGGCCATTTCTGAGTTGGGATTTACATCTG TGCTAAAGGATTTCTCAAACAAAATGTTCTTCCTGTTCCATTTCCAGAAGAAGGAGAAGCGGCAGAGCTCCAAGGGTAAAGAAATTGAGTGGCCAGAACT GAAGCCTTGCTTGTACAAGCGCCGGTGA
AA sequence Show only first row Show all	>Lus10002522 pacid=23146198 polypeptide=Lus10002522 locus=Lus10002522.g ID=Lus10002522.BGIv1.0 annot-version=v1.0 MNEAKNRKRKRRGGKHANKQKNNEITFPKQSPSSQVDAPPKRPKPSSSSSFLDKMKARLSGGHFRMLNEKLYTCTGGEAFNYFKEDPSLFNMYHTGYQEQ MSHWPEQPVKVIINWLKSHSPSFVVADFGCGDARLARNVKNKVFSFDLVSNDPSVIACDMSKLPLDSCAVDVAVFCLSLMGTDYPSYLKEAHRVLKQSGW LLIAEVKSRFDPTTGGADPNKFLKAISELGFTSVLKDFSNKMFFLFHFQKKEKRQSSKGKEIEWPELKPCLYKRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40530			S-adenosyl-L-methionine-depend...		Lus10002522 [exp]	0	1
AT5G55220			trigger factor type chaperone ...		Lus10000783 [exp]	1.0	0.8739
AT5G43822			Pentatricopeptide repeat (PPR)...		Lus10030735 [exp]	2.4	0.8123
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10038804 [exp]	2.4	0.8642
AT3G63240			DNAse I-like superfamily prote...		Lus10014684 [exp]	12.0	0.8054
AT5G07670			RNI-like superfamily protein (...		Lus10031165 [exp]	14.2	0.7037
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025215 [exp]	19.4	0.8467
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10038290 [exp]	21.7	0.8114
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10037206 [exp]	21.8	0.8255
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10043223 [exp]	30.0	0.7436
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10033255 [exp]	36.3	0.7670

Compare expression of checked genes

Lus10002522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.