Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39490 387 / 1e-129 CYP96A10 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) AT2G23180 375 / 1e-124 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) AT1G57750 369 / 1e-122 MAH1, CYP96A15 MID-CHAIN ALKANE HYDROXYLASE 1, "cytochrome P450, family 96, subfamily A, polypeptide 15", cytochrome P450, family 96, subfamily A, polypeptide 15 (.1.2) AT4G39480 366 / 2e-121 CYP96A9 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) AT1G65340 355 / 3e-117 CYP96A3 "cytochrome P450, family 96, subfamily A, polypeptide 3", cytochrome P450, family 96, subfamily A, polypeptide 3 (.1) AT2G21910 355 / 4e-117 CYP96A5 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) AT4G32170 343 / 9e-113 CYP96A2 "cytochrome P450, family 96, subfamily A, polypeptide 2", cytochrome P450, family 96, subfamily A, polypeptide 2 (.1) AT5G52320 342 / 3e-112 CYP96A4 "cytochrome P450, family 96, subfamily A, polypeptide 4", cytochrome P450, family 96, subfamily A, polypeptide 4 (.1) AT4G39500 335 / 5e-110 CYP96A11 "cytochrome P450, family 96, subfamily A, polypeptide 11", cytochrome P450, family 96, subfamily A, polypeptide 11 (.1) AT1G47620 335 / 3e-109 CYP96A8 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022277 [exp] 878 / 0 AT4G39490 395 / 1e-132 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10022279 [exp] 456 / 1e-156 AT2G23180 449 / 4e-154 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10002527 [exp] 453 / 2e-155 AT2G23180 454 / 7e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10003669 [exp] 430 / 3e-146 AT2G23180 440 / 4e-150 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10025677 [exp] 407 / 2e-137 AT2G23180 361 / 1e-119 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10028047 [exp] 403 / 5e-136 AT2G21910 375 / 1e-125 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) Lus10025678 [exp] 391 / 2e-131 AT4G39490 363 / 9e-121 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10015306 [exp] 397 / 2e-129 AT4G39490 342 / 3e-108 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10035234 [exp] 368 / 6e-122 AT4G39490 382 / 1e-127 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G397900 [exp] 440 / 3e-150 AT4G39490 480 / 6e-166 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.005G064400 [exp] 424 / 9e-144 AT4G39490 477 / 8e-165 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G086900 [exp] 420 / 2e-142 AT2G23180 455 / 2e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.015G132800 [exp] 392 / 1e-131 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.007G080300 [exp] 385 / 2e-128 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G087000 [exp] 370 / 4e-124 AT2G23180 373 / 2e-125 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.010G050100 [exp] 320 / 2e-103 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.008G183300 [exp] 320 / 3e-103 AT1G24540 682 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.005G092200 [exp] 319 / 2e-102 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.007G072100 [exp] 316 / 1e-101 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10002525 pacid=23146208 polypeptide=Lus10002525 locus=Lus10002525.g ID=Lus10002525.BGIv1.0 annot-version=v1.0 ATGAACAAAACCTCCCCCATTTACATTTGGCCTTTCTTAGGTATGCTCCCTAGCCTCCTTTGGAACTCTTCAAACTACAACCTCCACGATTTCTTAACCC AAGCTCTCAGACGAACCGGTGGGACATTCCTGCTCAAGGGCCCTTCTCTCATTAACGCCGACTACATCGTTACGAGCGATGCCATGAACTGCCATCACAT CTTCAGCCGGAACTCGGCCAACTATCACAAAGGCCACGATTTCAAGGTCATCATGGAGGACCTCGGTGACGGCATCTTCAACGTCGACGGAGATTCATGG AAGTTCCAAAGGCAGCTCCTCCATTCCCTCTTGAACAACAACGAGTTCGAGTCTCACACCATGAGAACCCTCCGCTTCAAGATGGAGTCCACGCTGTGTC GTGTCCTAGATGATGCATCTAAGCTCGGCACCGTGCTTGACATGCAGGACGTGTTCAAGAGGTTCATGTTCGACAACATCTGCATGCTGGTGCTGGGGTC CGACCCGTGTTGTCTTACTATCGATGGACTTTCGAGTAGCGTGTGTGACAAGGCGTTCGAGGATCTGGAGGAGGCAGCTATTTATCGCCACTTCGTTCCC ATACCGGTTTGGAAGTTGCAAAACAAGCTCGATATCGGTGTGGAGAGGAAGGTGATTCGAGCTTCGAAAGTCATGGAGCAGTTCCTATATGGGCACATCA AGGCCAAGAAAGAAGCCTTATTGTTAGCCAACAACAACAACAACAACAACGTAGCCACTACTACGTTAAACAAGCCGCAAAAGCTTGACTTGTTGACACA AATCTTGGTTGGTAAAGAAGAAGAAGAAGATGACAAGGGAGAATATTATTCGAACAATAACATTGTCTCTAAAAAATCCGACAAGTTTCTGAGAGACACT GCGTTGACCTTAATAGCCGCCGGAAGAGACACTATCTCCTCGGGACTGACATGGTTGCTTTGGATGGTTGCGACCCACCCGGAGGTTGAGAAAAAGATTG TTGACGAGATCAAACAAGTCATGGCTACACGGCCACGTGGCGGCGATATTGGAGGGATCAATAATAATAACAATGTTTGCCTCACCAAGTACGAGCTGAA CAAGCTCGTATATCTACATGCAGCCGTTTGCGAAACGTTTCGACTGTACCCTCCTGTTCCGTTCGAGCACAAGTGCGCGATCGAGACAGACGTTCTACCA AGCGGTCACGTGGTCGAACGAGGGACGAGGTTCTTGTTTTCGATATACTCGATGGGGAGGATGGAAGAGACGTGGGGGAAAGACTGCATGGAGTTCAAGC CGGAGAGATGGATTTCAGATCGAGGAGGGATAATCCACGTGCCGTCTTACAAGTTCATGACGTTCCTGGCCGGAGCGAGGACTTGCTTGGGGAAGAACAT GGCGTTCATGCAGTTGAAGGCGGTGGCGAGTTCGCTTCTGTACAACTACCAGTTTCGGCTGGTGGAAGGTGGTCATGTTGTTAGGCCAACTACATCCATG GTGATGGTTATGAAAGATGGGTTGAAGACTAGGGTTTCCAAGAGGGTTCACCATACCACCATTAATGCTACTGGCTAG
AA sequence Show only first row Show all	>Lus10002525 pacid=23146208 polypeptide=Lus10002525 locus=Lus10002525.g ID=Lus10002525.BGIv1.0 annot-version=v1.0 MNKTSPIYIWPFLGMLPSLLWNSSNYNLHDFLTQALRRTGGTFLLKGPSLINADYIVTSDAMNCHHIFSRNSANYHKGHDFKVIMEDLGDGIFNVDGDSW KFQRQLLHSLLNNNEFESHTMRTLRFKMESTLCRVLDDASKLGTVLDMQDVFKRFMFDNICMLVLGSDPCCLTIDGLSSSVCDKAFEDLEEAAIYRHFVP IPVWKLQNKLDIGVERKVIRASKVMEQFLYGHIKAKKEALLLANNNNNNNVATTTLNKPQKLDLLTQILVGKEEEEDDKGEYYSNNNIVSKKSDKFLRDT ALTLIAAGRDTISSGLTWLLWMVATHPEVEKKIVDEIKQVMATRPRGGDIGGINNNNNVCLTKYELNKLVYLHAAVCETFRLYPPVPFEHKCAIETDVLP SGHVVERGTRFLFSIYSMGRMEETWGKDCMEFKPERWISDRGGIIHVPSYKFMTFLAGARTCLGKNMAFMQLKAVASSLLYNYQFRLVEGGHVVRPTTSM VMVMKDGLKTRVSKRVHHTTINATG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10002525 [exp]	0	1
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10042007 [exp]	1.0	0.9849
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10010361 [exp]	2.0	0.9773
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10014938 [exp]	2.8	0.9635
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Lus10008641 [exp]	5.1	0.9422
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10031608 [exp]	6.9	0.9632
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Lus10035382 [exp]	6.9	0.9441
AT3G49950	GRAS		GRAS family transcription fact...		Lus10039709 [exp]	7.3	0.9521
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10034329 [exp]	8.0	0.9556
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10004008 [exp]	8.4	0.9634
AT1G51460		ABCG13	ATP-binding cassette G13, ABC-...		Lus10000339 [exp]	9.2	0.9626

Compare expression of checked genes

Lus10002525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.