Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23180 450 / 3e-154 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) AT4G39490 433 / 1e-147 CYP96A10 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) AT2G21910 422 / 2e-143 CYP96A5 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) AT4G39480 418 / 7e-142 CYP96A9 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) AT1G65340 414 / 1e-140 CYP96A3 "cytochrome P450, family 96, subfamily A, polypeptide 3", cytochrome P450, family 96, subfamily A, polypeptide 3 (.1) AT4G32170 411 / 2e-139 CYP96A2 "cytochrome P450, family 96, subfamily A, polypeptide 2", cytochrome P450, family 96, subfamily A, polypeptide 2 (.1) AT5G52320 400 / 3e-135 CYP96A4 "cytochrome P450, family 96, subfamily A, polypeptide 4", cytochrome P450, family 96, subfamily A, polypeptide 4 (.1) AT1G47620 394 / 1e-132 CYP96A8 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1) AT1G57750 393 / 2e-132 MAH1, CYP96A15 MID-CHAIN ALKANE HYDROXYLASE 1, "cytochrome P450, family 96, subfamily A, polypeptide 15", cytochrome P450, family 96, subfamily A, polypeptide 15 (.1.2) AT4G39510 393 / 4e-132 CYP96A12 "cytochrome P450, family 96, subfamily A, polypeptide 12", cytochrome P450, family 96, subfamily A, polypeptide 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022279 [exp] 927 / 0 AT2G23180 449 / 4e-154 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10003669 [exp] 916 / 0 AT2G23180 440 / 4e-150 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10035234 [exp] 523 / 0 AT4G39490 382 / 1e-127 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10035235 [exp] 508 / 6e-177 AT4G39490 359 / 2e-118 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10002525 [exp] 462 / 7e-159 AT4G39490 410 / 2e-138 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10022277 [exp] 461 / 9e-159 AT4G39490 395 / 1e-132 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10025677 [exp] 436 / 4e-149 AT2G23180 361 / 1e-119 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10025678 [exp] 431 / 3e-147 AT4G39490 363 / 9e-121 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10028047 [exp] 431 / 5e-147 AT2G21910 375 / 1e-125 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G064400 [exp] 493 / 2e-171 AT4G39490 477 / 8e-165 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.001G397900 [exp] 476 / 2e-164 AT4G39490 480 / 6e-166 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G086900 [exp] 455 / 2e-156 AT2G23180 455 / 2e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.007G080300 [exp] 454 / 8e-156 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G132800 [exp] 445 / 2e-152 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.005G092200 [exp] 383 / 2e-127 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.008G183300 [exp] 382 / 2e-127 AT1G24540 682 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.007G072100 [exp] 382 / 3e-127 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.015G087000 [exp] 376 / 8e-127 AT2G23180 373 / 2e-125 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.010G050100 [exp] 375 / 5e-125 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10002527 pacid=23146202 polypeptide=Lus10002527 locus=Lus10002527.g ID=Lus10002527.BGIv1.0 annot-version=v1.0 ATGTCGGTGCTGCTACTAATCCTTCTCATCTTGCTGGTTTACGTGGTGGTTCGGAAGAGCAAATCTTCGATATTACCAAACTGGCCTCTCGTTGGTATGG TTCCATCTCTACTGTGGCATGTCTCCCGCAACCTTCTACACCAACTAGTCACCCAAATCCTGAAACAAGAAGGAGGCTCTTTCTTCTTCAAAGGTCCCAT TTTTACTGGTCTCAACTTCTTTACCACCTCTGATCCTGCTAACGTCCACCACATCTTGAGCCGCAACTTCCCCAATTATCCCAAGGGGGCAGATCTGAAG GAAATAATGGAGCCATTAGGAGACGGAATATTCAACGCCGACGGCAATTCATGGAAGATGCAAAGGGAAATGATCCATTCCTTAATCAGCACCTCCAAAT TCGAGCAACTGATGCTCAAAACCCTCCGCCGCAAATTGGACAATGCCCTTATCCCCATCCTCCACGACGCCTCTTCTTCATCATCGAAAACACTGGACTT ACAAGAACTGATGAAGCGTTTTACATTCGACACAATCTGTCAGCTAGTCTTAGGATTCGACCCTGAATACCTATCCTTGGAACTTCCGTACTTGGATTAC GCAGAGGCGTTTGATGTGATTGAGGAAGTAATCGTGTACCGCCATTGCGTTCCTGTGTGCGTGTGGAAATTGCAGAAATGGCTTGGAATTGGGGAGGAGG CCAAGATGACAAAGGCTTCCAAATGCTTTGGGAGGTTCTTGGATGAGAGGGTTAAGACGAAGAAAGAAGAGCAGGGAAGATCCTCCGACGATGATTTTCT AACGCAGCTCATATCAGAGACTGAACGAATTCGGGATTCTGATGATTTCTTGAAAGACGCGGTCTTTAACTTGATTGTAGCAGGGAGAGACACGATTGCT GCTGCTCTCAGTTGGTTCTTCTGGCTTGTAGCTATCAATCCGACTGTTGAGCAAAATATTTTGGAAGAGATGAATCGAGTCATCCCTACGACTGATAAAA GCAGCAACAACGTTATTATTCCAAGCATGGAGGAACTGAACAGATTAGTGTATCTCCATGGAGCCATATGCGAGACTCTGCGGTTGTACCCATCAGTGCC TTTCGAGCATAAGCAAGCCCTGGAAGCAGATGTGCTCCCCAGTGGTCATGCCATTAGCAGCAACACGAAAATTCTACTGTCTCTCTACTCGATGGGAAGA ATGGAAGAGATATGGGGTGAGGATTGCATAGAATTCAAACCTGAGAGATGGGTTTCACATAAAGAAGATCAGGATGCAAAGATTGTTTATGTACCATCGT ACAAGTTTCCGGCCTTCTTAGCAGGACCGAGGACTTGCTTGGGGAGGAAGATAGCATTCACACAGATGAAGGTTATAGCAAGCTGTGTACTGCAAAATTT TAAGATTGAGGTGGTTGAAGGGCATCCTGTAGTTCCAGCTCCTGCCATCCTCATGTTCATGACATATGGACTCAAGATCAGAGTTTCTCATAGGACCTTG CCTAGTACTGCTTTCACTTTATGA
AA sequence Show only first row Show all	>Lus10002527 pacid=23146202 polypeptide=Lus10002527 locus=Lus10002527.g ID=Lus10002527.BGIv1.0 annot-version=v1.0 MSVLLLILLILLVYVVVRKSKSSILPNWPLVGMVPSLLWHVSRNLLHQLVTQILKQEGGSFFFKGPIFTGLNFFTTSDPANVHHILSRNFPNYPKGADLK EIMEPLGDGIFNADGNSWKMQREMIHSLISTSKFEQLMLKTLRRKLDNALIPILHDASSSSSKTLDLQELMKRFTFDTICQLVLGFDPEYLSLELPYLDY AEAFDVIEEVIVYRHCVPVCVWKLQKWLGIGEEAKMTKASKCFGRFLDERVKTKKEEQGRSSDDDFLTQLISETERIRDSDDFLKDAVFNLIVAGRDTIA AALSWFFWLVAINPTVEQNILEEMNRVIPTTDKSSNNVIIPSMEELNRLVYLHGAICETLRLYPSVPFEHKQALEADVLPSGHAISSNTKILLSLYSMGR MEEIWGEDCIEFKPERWVSHKEDQDAKIVYVPSYKFPAFLAGPRTCLGRKIAFTQMKVIASCVLQNFKIEVVEGHPVVPAPAILMFMTYGLKIRVSHRTL PSTAFTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10002527 [exp]	0	1
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023625 [exp]	3.0	0.8962
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10037294 [exp]	4.5	0.8733
AT4G11780			unknown protein		Lus10024488 [exp]	4.6	0.8528
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Lus10023741 [exp]	9.2	0.8491
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10017124 [exp]	9.8	0.8325
AT5G47700			60S acidic ribosomal protein f...		Lus10033403 [exp]	9.8	0.8224
AT2G24210		AtTPS10	terpene synthase 10 (.1)		Lus10006355 [exp]	14.1	0.8340
AT5G59510		RTFL5, DVL18	DEVIL 18, ROTUNDIFOLIA like 5 ...		Lus10001569 [exp]	28.4	0.7934
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10039705 [exp]	28.5	0.8069
AT1G27940		ABCB13, PGP13	ATP-binding cassette B13, P-gl...		Lus10017270 [exp]	28.6	0.7816

Compare expression of checked genes

Lus10002527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.