Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46960 70 / 2e-14 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT1G59760 45 / 6e-06 AtMTR4 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT2G06990 39 / 0.0006 HEN2 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017528 [exp] 72 / 2e-15 AT3G46960 1971 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10001185 [exp] 59 / 3e-12 AT5G17430 57 / 2e-10 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Lus10036719 [exp] 42 / 5e-05 AT3G54320 288 / 3e-93 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10024454 [exp] 42 / 5e-05 AT1G59760 1557 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10007442 [exp] 42 / 6e-05 AT1G59760 1523 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10037209 [exp] 42 / 6e-05 AT3G54320 286 / 1e-92 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10013268 [exp] 39 / 0.0006 AT3G54320 275 / 3e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10022944 [exp] 39 / 0.0007 AT2G06990 713 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10027599 [exp] 39 / 0.0008 AT2G06990 1633 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G041200 [exp] 69 / 2e-14 AT3G46960 1988 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.010G092800 [exp] 44 / 1e-05 AT3G54320 259 / 2e-82 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.017G078600 [exp] 44 / 1e-05 AT3G54320 289 / 2e-94 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.004G228700 [exp] 42 / 4e-05 AT1G59760 1581 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.018G146001 [exp] 40 / 0.0002 AT2G06990 972 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.006G078000 [exp] 40 / 0.0002 AT2G06990 1634 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002528 pacid=23157292 polypeptide=Lus10002528 locus=Lus10002528.g ID=Lus10002528.BGIv1.0 annot-version=v1.0 ATGTATGAGATTGACGTCGATGAAGACCACATGGACGAGCTTGGATCCCAGCCATTCGATGCTAATGGGATGCTTCTTAACGGGCTTATGAATACAAAAG AGGTAGCGGCAAGGGCTTATGATTTAGCTCAAGTCCTGGGGAACTTCAACTTTGACCAACTTCCAGATTATGAGGAGGTTGAGATCATGAAACATGTAAC TAGAGAAGATTACTTACTTCGCTTCCTTAAGAAGTTCGTTGATATTGATGCTGCTTTTGAAGAACATTTGTCAGGAGACGAACCTTCACTCTCTGATGTC GAAGTGAAGCACTGCACCAAGGCTGTCTGCACTGCTCCCATGAAAACGATCAGTAATCAAAAGTACCGCGATTTCTGTGAGAAGCTTGATGTTGGCCTTC AGACTGGTGATATTAGACTGGTCTTATCATGA
AA sequence Show only first row Show all	>Lus10002528 pacid=23157292 polypeptide=Lus10002528 locus=Lus10002528.g ID=Lus10002528.BGIv1.0 annot-version=v1.0 MYEIDVDEDHMDELGSQPFDANGMLLNGLMNTKEVAARAYDLAQVLGNFNFDQLPDYEEVEIMKHVTREDYLLRFLKKFVDIDAAFEEHLSGDEPSLSDV EVKHCTKAVCTAPMKTISNQKYRDFCEKLDVGLQTGDIRLVLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10002528 [exp]	0	1
AT5G61140			U5 small nuclear ribonucleopro...		Lus10040524 [exp]	2.2	0.9271
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10014045 [exp]	4.2	0.8912
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10001717 [exp]	6.3	0.9017
AT3G14460			LRR and NB-ARC domains-contain...		Lus10024173 [exp]	6.3	0.8686
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Lus10015638 [exp]	9.5	0.8778
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	10.4	0.8831
AT3G02065			P-loop containing nucleoside t...		Lus10006736 [exp]	12.0	0.7707
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	12.6	0.8820
AT3G13225			WW domain-containing protein (...		Lus10005845 [exp]	14.4	0.8747
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Lus10003572 [exp]	14.7	0.8756

Compare expression of checked genes

Lus10002528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.