Gene [FLAX] | FIBexDB

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT2G25600	1030 / 0	AKT6, SPIK	Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1)
AT2G26650	1014 / 0	AKT1, ATAKT1	K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1)
AT4G32500	1009 / 0	AKT5	K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1)
AT4G18290	570 / 0	KAT2	potassium channel in Arabidopsis thaliana 2 (.1)
AT4G22200	565 / 0	AKT3, AKT2/3	potassium transport 2/3 (.1)
AT5G46240	560 / 0	KAT1	potassium channel in Arabidopsis thaliana 1 (.1)
AT4G32650	418 / 6e-136	AtLKT1, KAT3, ATKC1	A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3)
AT3G02850	378 / 8e-118	SKOR	STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
AT5G37500	375 / 9e-117	GORK	gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1)
AT5G57940	69 / 9e-12	ATCNGC5	cyclic nucleotide gated channel 5 (.1.2.3)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10013115 [exp]	1209 / 0	AT2G25600	1036 / 0.0	Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1)
Lus10008082 [exp]	1141 / 0	AT2G25600	994 / 0.0	Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1)
Lus10019442 [exp]	1044 / 0	AT2G26650	1252 / 0.0	K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1)
Lus10043298 [exp]	1036 / 0	AT2G26650	1250 / 0.0	K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1)
Lus10033052 [exp]	1004 / 0	AT2G26650	1211 / 0.0	K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1)
Lus10019944 [exp]	608 / 0	AT4G22200	1111 / 0.0	potassium transport 2/3 (.1)
Lus10015474 [exp]	598 / 0	AT4G22200	1093 / 0.0	potassium transport 2/3 (.1)
Lus10042831 [exp]	578 / 0	AT5G46240	825 / 0.0	potassium channel in Arabidopsis thaliana 1 (.1)
Lus10017766 [exp]	574 / 0	AT2G26650	719 / 0.0	K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.006G249900 [exp]	1152 / 0	AT2G25600	1065 / 0.0	Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1)
Potri.018G031600 [exp]	1107 / 0	AT2G25600	1078 / 0.0	Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1)
Potri.018G071400 [exp]	1018 / 0	AT2G26650	1192 / 0.0	K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1)
Potri.006G154600 [exp]	721 / 0	AT2G26650	816 / 0.0	K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1)
Potri.003G018800 [exp]	603 / 0	AT4G22200	1045 / 0.0	potassium transport 2/3 (.1)
Potri.004G132200 [exp]	595 / 0	AT5G46240	913 / 0.0	potassium channel in Arabidopsis thaliana 1 (.1)
Potri.006G245000 [exp]	478 / 6e-159	AT4G32650	752 / 0.0	A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3)
Potri.018G035500 [exp]	458 / 6e-151	AT4G32650	777 / 0.0	A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3)
Potri.012G124944 [exp]	439 / 5e-144	AT4G32650	734 / 0.0	A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3)
Potri.017G135400 [exp]	378 / 1e-117	AT3G02850	1269 / 0.0	STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0465 [flax] [poplar]	Ank	PF00023 [flax] [poplar]	Ank	Ankyrin repeat
CL0030 [flax] [poplar]	Ion_channel	PF00520 [flax] [poplar]	Ion_trans	Ion transport protein
CL0030 [flax] [poplar]		PF11834 [flax] [poplar]	KHA	KHA, dimerisation domain of potassium ion channel
CL0029 [flax] [poplar]	Cupin	PF00027 [flax] [poplar]	cNMP_binding	Cyclic nucleotide-binding domain

Representative CDS sequence

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>Lus10002529 pacid=23157291 polypeptide=Lus10002529 locus=Lus10002529.g ID=Lus10002529.BGIv1.0 annot-version=v1.0

ATGGGGAAAAAGAGCAAGGGTGGTATTTTCGACGTCAGCATAGGAGCAGTTGATGGATTGCCAATTCATGACAAAAAAGACATTGATCTTCACTCGGTTG

ACGGTGGAAGCCATTTCAGTATCACCGGCGACATTCTTCCTTCTCTTGGTTCCACTCGTAGCGCTCCTCGTATGACCCTCAGCCGCTTTGTTATCTCCCC

ATTTGATCCTCACTATAGGGGTTGGGAAACATTCCTTGTGCTTTTGGTTTACTATACGGCATGGGTATCGCCATTTGAATTTGGATTCATTCCTCATCCC

AATGGTCCACTTATGATTGCTGATAATGTTGTGAATGCAATCTTCTTCATCGACATTGTCTTGACCTTCTTCGTTGCTTACCTCGACAAACACACTTACC

TCCTTATTGATTCCAAGAAGCAAATTGCTTGGAGGTACGTTAGCACTTGGTTCATTTTCGACCTCATCTCCACAATTCCATCCGAAATTGTTCGTGTCAT

CTTGCCCAATAATCTTCAGTCCTATGGATACGTTAGCATGCTCCGTCTTTGGCGCCTTCGGCGAGTCAGTCGATTCTTTGCAAGATTGGAGAAAGATAAA

AATTACAGCTATTTTTGGACTCGATGTGTGAAGCTTGTTTGTGTAACTCTATTTGTGTTGCACATGGCTGCATGCTTCTTCTATCGCATTGCCGCGCATT

ACTATGATCCGACGGAGACGTGGATTGGGTCGGTTTGGGAGGATTTTAAAAAAGAGGAAGTTTTTGTACGCTATGTGAAATCCTTGTATTGGGCCATAAC

AACAATGACTACCACGGGATATGGTGACTTGCATGCTGTGAATCCTAGTGAAATGGCATTTGTAATCTTGTATATGCTCTTCTGTCTTGGCTTGAATTCC

TACATAATTGGTAATATGACCAATTTGGTGGTTCATGCAGCCACTCGCACTAGACATTTTAGAGACACTATTCATGCTGCCTCAAGTTTTGCACAAAGGA

ATCGCCTACCTGTTCGTCTACAAGATCAAATGATTGCTCATTTGAGTTTGAAGTACAAAACTGACTCAGAGGGACTCCATCAACAAGAGGCCATTGATTC

GCTTCCTAAAGCCATTCGATCCAGTATTGCAAACTATTTATTTTACTCACTAGTGGACAGGGTCTACTTGTTTCGAGGTGTTTCAAATGACTTACTCTTC

CAGTTGGTGTCAGAAATGAAGGCCGAGTACTTTCCTCCTAGAGAGGATGTGATTTTGCAAAATGAAGCCCCCACCGAAATGTACTTTTTAGTCTCTGGTG

CTGCGGTTTATGAATGCATGATTGTCATTTGCAATGAAACTAACAAGCGAAATTTTGTTTCACAGGAGCTTATCGTACATAGAAATGCAATAGAAAACGT

GGTTGGTGAGGCAAGAACTGGTGATGTGGTTGGCGAGGTTGGTGTATTATGTTACAGGCCACAACTGTTCACAGTTCGAACCAAGAGACTGAGTCAACTT

CTACGTTTGAATAGAACTTCATTCTTAAATCTAGTTCAAGCTAATGTTGGAGATGGGACGATTATCATGAACAATCTTCTTCAGCATTTGAAGGAAAGGA

ATGATCCAATAATGCAAGAAATATTATTGGAAACAGAGCACATACTGGCTCAAGGAAGAATGGATTTGCCTCTTACTCTATGTTTTGCAGCCACAAGAGG

GGATGATCTATTATTACATCAATTACTAAAGCGTGGTGCAGATCCAAATGAGGCAGACAATAACGCACGAACTGCAATGCATATTGCTGCTTCAAACGGG

AATGAACATTGCGTAGCGTTGCTTCTGGAATATGGAGGAGATCCTAACAGAAAAGACTCAGAAGGTAATGTCCCATTGTGGGATGCGCTGCTTGGCAAGC

ATACATCGGTAGTGAAGATGCTAGTGGAGAACGGTGCTACACTTTCTTCGGGTGATACCGGTGAATTTGCATTCACAGCAGCTGAGCAAAATGACTTAGA

GTTGCTCAAGGAAATTGTTAAGTATGGCGGTGATGTAACATTGACAACAAGCAGCGGAAACACAGCACTTCATGCTTCCATATCTGACGGAAACACGGAG

ATGGTTAAGTTCCTCCTAAACCAAGGAGTGGACATTGATATACCAGATGGAAATGGGTGGACAGCAAGGGCTTTAGCAGATCATCAAGGGCATGATGAGA

TCAAATTATTGTTCCAAAATAGACCTGAAGAAGTAGTTAAGAAAGCAACAAAGCAGCAGCCCCTCACAATCCAAACCAAGAAGGCAGCAGCAGCAGCAGC

CTCCGGGAAGCGAATTGCCAACAGCCAATACAGGTGGTGGGGGGGGGGGGGGGGGGGTGGTGAGGGGGAAATTTTGACACCTGGAGGTAGTGTTTCGGGA

ATCCCGGGCTTCAGCACCTCTCCTCCAGCTCGTGTTACCGTTAGTTGTCTAGAGAAAGGTGATGTATCAGGGAAGTTAATCCTACTACCAAACTCACTTG

ACGAACTTTTGGACATTGGAGGGAAGAAGTATGGGTTTAGTGCATCCAAAATCCTAACCAAAGAAGGAGCACTGATTGAGGATATAGATTTGATTAGAGA

TGGCGACCATATACTTCTCTCTAGCTAG

AA sequence

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>Lus10002529 pacid=23157291 polypeptide=Lus10002529 locus=Lus10002529.g ID=Lus10002529.BGIv1.0 annot-version=v1.0

MGKKSKGGIFDVSIGAVDGLPIHDKKDIDLHSVDGGSHFSITGDILPSLGSTRSAPRMTLSRFVISPFDPHYRGWETFLVLLVYYTAWVSPFEFGFIPHP

NGPLMIADNVVNAIFFIDIVLTFFVAYLDKHTYLLIDSKKQIAWRYVSTWFIFDLISTIPSEIVRVILPNNLQSYGYVSMLRLWRLRRVSRFFARLEKDK

NYSYFWTRCVKLVCVTLFVLHMAACFFYRIAAHYYDPTETWIGSVWEDFKKEEVFVRYVKSLYWAITTMTTTGYGDLHAVNPSEMAFVILYMLFCLGLNS

YIIGNMTNLVVHAATRTRHFRDTIHAASSFAQRNRLPVRLQDQMIAHLSLKYKTDSEGLHQQEAIDSLPKAIRSSIANYLFYSLVDRVYLFRGVSNDLLF

QLVSEMKAEYFPPREDVILQNEAPTEMYFLVSGAAVYECMIVICNETNKRNFVSQELIVHRNAIENVVGEARTGDVVGEVGVLCYRPQLFTVRTKRLSQL

LRLNRTSFLNLVQANVGDGTIIMNNLLQHLKERNDPIMQEILLETEHILAQGRMDLPLTLCFAATRGDDLLLHQLLKRGADPNEADNNARTAMHIAASNG

NEHCVALLLEYGGDPNRKDSEGNVPLWDALLGKHTSVVKMLVENGATLSSGDTGEFAFTAAEQNDLELLKEIVKYGGDVTLTTSSGNTALHASISDGNTE

MVKFLLNQGVDIDIPDGNGWTARALADHQGHDEIKLLFQNRPEEVVKKATKQQPLTIQTKKAAAAAASGKRIANSQYRWWGGGGGGGEGEILTPGGSVSG

IPGFSTSPPARVTVSCLEKGDVSGKLILLPNSLDELLDIGGKKYGFSASKILTKEGALIEDIDLIRDGDHILLSS

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Lus10002529 [exp]	0	1

Lus10002529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10002529 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10002529 coexpression network