Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20480 59 / 5e-09 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 56 / 9e-08 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT4G19010 54 / 2e-07 AMP-dependent synthetase and ligase family protein (.1) AT1G20490 52 / 8e-07 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 45 / 0.0001 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007144 [exp] 466 / 8e-162 ND 47 / 7e-06 Lus10007143 [exp] 285 / 3e-93 ND / Lus10027377 [exp] 209 / 7e-57 AT4G05160 95 / 2e-19 AMP-dependent synthetase and ligase family protein (.1) Lus10002549 [exp] 189 / 4e-50 AT4G05160 74 / 5e-13 AMP-dependent synthetase and ligase family protein (.1) Lus10037934 [exp] 59 / 8e-09 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10038667 [exp] 57 / 2e-08 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10015999 [exp] 55 / 1e-07 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10016630 [exp] 54 / 3e-07 AT4G19010 532 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10002791 [exp] 50 / 4e-06 AT5G63380 688 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G227800 [exp] 678 / 0 AT3G21230 47 / 3e-05 4-coumarate:CoA ligase 5 (.1) Potri.T085701 [exp] 212 / 6e-58 AT1G20480 91 / 3e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.003G210701 [exp] 211 / 1e-57 AT1G20480 91 / 3e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.003G210600 [exp] 211 / 2e-57 AT1G20480 91 / 4e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094800 [exp] 65 / 1e-10 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G230200 [exp] 57 / 2e-08 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 57 / 3e-08 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.015G092300 [exp] 50 / 4e-06 AT5G63380 594 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.003G099700 [exp] 46 / 9e-05 AT4G19010 634 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 43 / 0.0008 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10002535 pacid=23157298 polypeptide=Lus10002535 locus=Lus10002535.g ID=Lus10002535.BGIv1.0 annot-version=v1.0 ATGATAAACTACGAGAACTATGATCTCTCCTTCCCTGACCAACCAGTGATCGACCATTACCTCCCTGTTTGGGCTTCCCTCCCTTCCTTCCGCTCCAAAC CTGCATTCATCTGGTACGATAAACAAACTTCACTTGTACTCACTTACTCCGAGCTCAATCGCTCTGTCCAATCCATATCATCCCAATTACTCCTCCGCTT ACGCCGCCGTGACACCGTCCTTGTCCTCTGCCAGCCGGGTCTCGAGCTCGTCGAAATCATCTTCAGTTGCCAAAGATCGGGGCTCGTCTGCGTCCCTATG TTCCCTCCGAACCCATCATTCATCGACCAAACAGCTTACCACCACCTCGCCCGAGTCGTCTCCCAGACTAAACCCACAGGCGCCATCGCTCACCCTAACT ATGTTGCCGCAGTTCGCCGCTACATTAATTCCGGAAATTCCAAGCTTGCTAGATTGCTCCAGAAGCTCCGTTGGATTTCCACTAGTGACATTTCTTCCTC GGTCGATGCTGTTGCCGCCGAGAGTTGTGGGTCTTGGAAAAATGATGTTGTTGCCGCCGAGAGTTGTGGGCTGGATGAAGTGTACTTGATTCAGTACACT TCGGGTGCTACTGGACTGCCCAAACCGGTTCAGCTCACTGCCGGGTCATCCGTCCATAATGTCAGAGTTGCGAGGAAGGCCTACGACTTGCATCCAAACA GCATCATTGCTTCGTGGCTACCCCAGTACCATGATTGCGGCCTTCAATTCTTGCTCCTCACGATTGTCTCCGGCGCCACTTGTGTTCTGACCTCTCCTTT TTCATTCCTCGCTCGGCCACGAATTTGGCTGGAAATGATTTCCCGTTTCAAAGCCACTTGCTCTCCCGTTCCTTCCTTCACTCTACCTCTCGTCTTGAAG CGGGGCGGAGTTGGGGTTTCGAAAAGTGATGATTCGATCAATTTGAGTAGCATGAGAAACTTAATCCTAATCAACGAGCCAATTTACAAGTCGGAGGTTG ACAAGTTTGTGGAGGTGTTCGAGACATTAGGGTTGGATTGCTCTTCGATTTCCCCATCGTATGGTCTGGCGGAGAACTGCACATTCGTATCGACGGCGTG GAGAGATCATCATGAGAAGGGAACTAATAATACGAAATTCGAATTTCCGTCTTACAAGAAGTTGTTGCCTAGCGCGGTGCTTTCGTCCGAGCACGAAGAC GGTGATGAGGAGATGGAAATCGTTGTTGTAAACGAAGAGACACATAATGTCGTAGGAGATGGGATGGAAGGAGAGATTTGGGTGTCCTCTCCGAGTAATT GTTCTGGTTACTTGGAACACCCTTCGTTGAGTCGAGAAATCTGCCAAGCGAGGCTGAAGAACAAGATAAGCAAGCTGTGTTTTCTCCGTACCGGGGACAG GGGAGTTGTTGTCGTCGCTGGAGGAAGAGATCGATATCTCTATGTCACAGGTAGGTGCTCCGACGTGATAAAACTAGCCGATGGGAGGGAAATCCACCCA CATTATTTGGAGACGGCGGCACAAAGGAGCTGCCCTGAATTTATCAGAGGAGGTTGTTTGGCCGCGTTTAAGGTAGAAGACGATGTCGTTTTAGTATCTG AGATGCAACAAATTGGCGGGAAGGGTGGTGAGGAATCTCTTATGAAAGAAATATGCGTGAAAATAAAAAAAGGAGTTTTGGAAGAGGAGAATGTGGCAAT TGGGAAGGTGGTTTTAGTGGAGAGTGGGAGTGTGCCAAAAACGACGTCAGGTAAGATTAGGAGGTGGGCAGCAAAGGATAAGTTTATTGCTCGAAAGATG AGGGTTTTGATTGATGTGAAATTCGATGGTAAAGTTGGTGATGAGGAAGAAGAAGAAAAGGCGGAAGCAAATAAAAATTGGATTGAGTTTTGGTCATCCA GGTCCGTCAATTATCAGAATCGTGACAATTTTATGTTGCGTTCTCAATTGTGA
AA sequence Show only first row Show all	>Lus10002535 pacid=23157298 polypeptide=Lus10002535 locus=Lus10002535.g ID=Lus10002535.BGIv1.0 annot-version=v1.0 MINYENYDLSFPDQPVIDHYLPVWASLPSFRSKPAFIWYDKQTSLVLTYSELNRSVQSISSQLLLRLRRRDTVLVLCQPGLELVEIIFSCQRSGLVCVPM FPPNPSFIDQTAYHHLARVVSQTKPTGAIAHPNYVAAVRRYINSGNSKLARLLQKLRWISTSDISSSVDAVAAESCGSWKNDVVAAESCGLDEVYLIQYT SGATGLPKPVQLTAGSSVHNVRVARKAYDLHPNSIIASWLPQYHDCGLQFLLLTIVSGATCVLTSPFSFLARPRIWLEMISRFKATCSPVPSFTLPLVLK RGGVGVSKSDDSINLSSMRNLILINEPIYKSEVDKFVEVFETLGLDCSSISPSYGLAENCTFVSTAWRDHHEKGTNNTKFEFPSYKKLLPSAVLSSEHED GDEEMEIVVVNEETHNVVGDGMEGEIWVSSPSNCSGYLEHPSLSREICQARLKNKISKLCFLRTGDRGVVVVAGGRDRYLYVTGRCSDVIKLADGREIHP HYLETAAQRSCPEFIRGGCLAAFKVEDDVVLVSEMQQIGGKGGEESLMKEICVKIKKGVLEEENVAIGKVVLVESGSVPKTTSGKIRRWAAKDKFIARKM RVLIDVKFDGKVGDEEEEEKAEANKNWIEFWSSRSVNYQNRDNFMLRSQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10002535 [exp]	0	1
AT5G47230	AP2_ERF	ATERF5, ATERF-5...	ETHYLENE RESPONSIVE ELEMENT BI...		Lus10007841 [exp]	2.8	0.8537
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10026623 [exp]	6.0	0.7888
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10040933 [exp]	13.5	0.7674
AT1G18010			Major facilitator superfamily ...		Lus10009416 [exp]	13.6	0.7700
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10027611 [exp]	22.2	0.7844
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10039507 [exp]	53.5	0.7433
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10030188 [exp]	155.5	0.6814
AT1G66880			Protein kinase superfamily pro...		Lus10009149 [exp]	173.9	0.6841

Compare expression of checked genes

Lus10002535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.