Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57720 608 / 0 Translation elongation factor EF1B, gamma chain (.1.2) AT1G09640 597 / 0 Translation elongation factor EF1B, gamma chain (.1.2) AT2G30870 74 / 6e-15 ERD13, ATGSTF4, ATGSTF10 EARLY DEHYDRATION-INDUCED 13, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, glutathione S-transferase PHI 10 (.1) AT5G17220 71 / 1e-13 GST26, TT19, ATGSTF12 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) AT3G62760 68 / 9e-13 ATGSTF13 Glutathione S-transferase family protein (.1) AT2G30860 65 / 9e-12 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2) AT3G03190 64 / 3e-11 ATGSTF6, ATGSTF11 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) AT2G47730 62 / 2e-10 GST6, ATGSTF5, ATGSTF8 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) AT1G02940 56 / 3e-08 ATGSTF5 glutathione S-transferase (class phi) 5 (.1) AT1G02920 54 / 4e-08 ATGST11, GST11, ATGSTF8, ATGSTF7 ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, glutathione S-transferase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002536 [exp] 757 / 0 AT1G09640 630 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10007148 [exp] 748 / 0 AT1G09640 638 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10007150 [exp] 746 / 0 AT1G09640 625 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10033213 [exp] 652 / 0 AT1G57720 600 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10010839 [exp] 154 / 2e-42 AT3G30200 47 / 9e-06 Plant transposase (Ptta/En/Spm family) (.1) Lus10042521 [exp] 101 / 1e-25 ND / Lus10024550 [exp] 105 / 8e-25 ND / Lus10032810 [exp] 84 / 2e-18 ND / Lus10034588 [exp] 74 / 1e-14 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G004700 [exp] 648 / 0 AT1G57720 596 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Potri.004G226300 [exp] 645 / 0 AT1G57720 323 / 3e-107 Translation elongation factor EF1B, gamma chain (.1.2) Potri.019G077000 [exp] 639 / 0 AT1G57720 303 / 1e-99 Translation elongation factor EF1B, gamma chain (.1.2) Potri.013G103100 [exp] 129 / 1e-35 AT1G09640 115 / 2e-32 Translation elongation factor EF1B, gamma chain (.1.2) Potri.002G015100 [exp] 72 / 5e-14 AT3G03190 196 / 2e-63 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G015200 [exp] 70 / 3e-13 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G207093 [exp] 68 / 1e-12 AT1G02930 263 / 5e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207479 [exp] 67 / 1e-12 AT1G02930 267 / 1e-91 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207286 [exp] 67 / 1e-12 AT1G02930 263 / 4e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.014G132200 [exp] 65 / 1e-11 AT3G62760 295 / 2e-102 Glutathione S-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00647 [flax] [poplar] EF1G Elongation factor 1 gamma, conserved domain CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0172 [flax] [poplar] PF03004 [flax] [poplar] Transposase_24 Plant transposase (Ptta/En/Spm family) CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002537 pacid=23157304 polypeptide=Lus10002537 locus=Lus10002537.g ID=Lus10002537.BGIv1.0 annot-version=v1.0 ATGATTAATCGAGAAAAAAAAGTGAAGCAGAACAAGGAAAATAAGGAGAAGCAAAAGAGGAACCACGCAGGTGGGTCGATGTCATACGCTCCTTACCATG AAGAGCTCTTTCAAAAGAATGACATAGTACCTTCAAGAGGAGAGGTTTGGAGGCGAGCTAACCAAATGGAGGATGGAAGTTGGGAAAGTCCACATGCTGA AGCAATACCGGAGCGCATCCTCCACTATGAGCGACAAGGGCTAAATTGCACAACCTCAAGTAGTAGAGTTTCCGACGCCACTTCTTCATTTGCACACACG GTTGATGGTCGTCCTGAATATGAAGACACACTTTGTTGCATGCAAGAAGAGTGGATGCAGAGGGATACTACAAGAGAGGCTGAATATCATAGGAGGGAGG CTGAATGGGCACAACGGGTTGCTCAGTTGGAAAACAAGGTGACCAACATAAAAAAGACTCAACAACAACCATATCCCATCTTAGGCGATGATTCTGAATC CGAAAAAGAGGAGATCCAAGAAGAGAAGGTATTGCACGGTGGGAACACCAATAAGAATGTTTTCAAAACTCTCATTGCAGCAGAGTATTCAGGGGTGAAG GTTGATTTGGTTAAGAATTTTCAAATGGGTGTCTCAAATAAAACCCCTGAATATCTAAAGTTGAATCCCATTGGCAAGGTTCCAGTCTTGGAGACTCCTG ATGGCCCCATATTTGAGAGCAATGCTATTGCTCGATATGTGACCAAGTTGAAGGCCGACAATCCTCTTTATGGAAGCTCACTAATTGAATATGCCCATAT TGAGCAGTGGATTGACTTTGCATCAATGGAGATTGATGCCAATGTTGCTAAATGGTTGTATCCCAGATTGGGGTTTGTCCCATTCCTCGCCCCTGCTGAG GAAACTTCTATTTCAGCATTGAAGAGAGCTCTTGATGTGTTGAACTCGTACCTTGCCACAACCACCTTCTTGGTTGGGCATTCTGTTACCTTGGCCGATA TCATACTCACATGTAATCTGCACATGGGATTCTCTTGGATCCTGACAAAGAGCTTTACCTCAGCATTTCCTCACGTAGAGAGATACTTCTGGACCATGGT TAATCAACCAAATTTCAAGAAGGTAATGGGGGAAGTGAAGCAAGCTGAGTCAGTTCCTGCTGTTGAGTCTGGAAAGAAACCAGCGCAGACAAAGGAAAAG GCCAAGCCGAAGGAGGAGACTGAGAAGGAAGTAGCTAAACCCAAGCCAGAAGCTGTTGCAGAAGAGGATGAGCCGGCGCCAAAGCCAAAAGCAAAGAACC CCCTCGATTTGCTGCCACCTAGTAAGATGATACTAGATGAGTGGAAGAGGCTCTACTCCAACACTAAGACCAACTTCCGTGAGGTGGCAATCAAAGGTTT TTGGGACATGTATGATCCCGAGGGATACTCACTGTGGTTCTGTGACTACAAGTACAACGATGAGAATACAGTCTCGTTTGTCACCCTTAACAAGGTTGGT GGGTTTCTCCAGAGGATGGATCTTGCTCGCAAGTATGCATTTGGCAAGATGCTGGTAATTGGATCTGAAGCACCATTCAAGGTGAAGGGATTGTGGTTAT TCCGTGGGCAGCAGGTGCCTCAGTTTGTTATAGATGAGTGCTACGACATGGAGCTGTACGAGTGGAAGAAGGTAGACATCTCCGACGAAGCCCAGAAGGA GCGAGTGAACCAGATGATTGAAGACCAAGAACCTTTTGAAGGAGAGGCTCTCCTAGATGCTAAATGCTTCAAATAG
AA sequence Show only first row Show all	>Lus10002537 pacid=23157304 polypeptide=Lus10002537 locus=Lus10002537.g ID=Lus10002537.BGIv1.0 annot-version=v1.0 MINREKKVKQNKENKEKQKRNHAGGSMSYAPYHEELFQKNDIVPSRGEVWRRANQMEDGSWESPHAEAIPERILHYERQGLNCTTSSSRVSDATSSFAHT VDGRPEYEDTLCCMQEEWMQRDTTREAEYHRREAEWAQRVAQLENKVTNIKKTQQQPYPILGDDSESEKEEIQEEKVLHGGNTNKNVFKTLIAAEYSGVK VDLVKNFQMGVSNKTPEYLKLNPIGKVPVLETPDGPIFESNAIARYVTKLKADNPLYGSSLIEYAHIEQWIDFASMEIDANVAKWLYPRLGFVPFLAPAE ETSISALKRALDVLNSYLATTTFLVGHSVTLADIILTCNLHMGFSWILTKSFTSAFPHVERYFWTMVNQPNFKKVMGEVKQAESVPAVESGKKPAQTKEK AKPKEETEKEVAKPKPEAVAEEDEPAPKPKAKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVG GFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWLFRGQQVPQFVIDECYDMELYEWKKVDISDEAQKERVNQMIEDQEPFEGEALLDAKCFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09640			Translation elongation factor ...		Lus10002537 [exp]	0	1
AT1G09640			Translation elongation factor ...		Lus10007148 [exp]	1.0	0.9881
AT1G09640			Translation elongation factor ...		Lus10002536 [exp]	1.4	0.9722
AT3G20330		PYRB	PYRIMIDINE B (.1)		Lus10013346 [exp]	1.7	0.9652
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10027180 [exp]	2.4	0.9599
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Lus10026904 [exp]	3.7	0.9555
AT5G10920			L-Aspartase-like family protei...		Lus10002606 [exp]	5.3	0.9629
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10041971 [exp]	6.0	0.9561
AT5G10920			L-Aspartase-like family protei...		Lus10032846 [exp]	6.6	0.9572
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10042966 [exp]	7.0	0.9591
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10002851 [exp]	7.1	0.9575

Compare expression of checked genes

Lus10002537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.