Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42785 46 / 4e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001961 [exp] 179 / 1e-59 AT5G42785 62 / 8e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G228800 [exp] 60 / 1e-12 AT5G42785 56 / 2e-11 unknown protein Potri.002G034300 [exp] 59 / 4e-12 AT5G42785 59 / 2e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002541 pacid=23157295 polypeptide=Lus10002541 locus=Lus10002541.g ID=Lus10002541.BGIv1.0 annot-version=v1.0 ATGGGCGACAGAACTTTCGTTGTGATTTTCTTTTTCTGGGCTGCCCTCACAATAATCACCCCGATGCTCATTCTCCTCTCGGAATCTTCCAAACCCAGCA CTTTGGTTTCCCAGGGTAAGCATATTAACAGCTTTCATGAACAAAAAGTTACTCCTGTTCCTGACCGTTCTCTTTTCATCCATCAAGATGTAATGCAAAG TACTGAAGCAGTAACGCCGAGGAAAATGATTGGATACGTAGAGAAGAAATGGAACATGAGTACAACTGCAGCAGCAGCAAGGAATGTTTCAGCAGGACCA ACTGAAGCTCCACAGCCTTCCCCTGAACCTGATGATCATTCTCCCAAGGCCGCTGATAGAGTTGTTGACGTTTGGGGAAGATCGGCAGACGACCAATAA
AA sequence Show only first row Show all	>Lus10002541 pacid=23157295 polypeptide=Lus10002541 locus=Lus10002541.g ID=Lus10002541.BGIv1.0 annot-version=v1.0 MGDRTFVVIFFFWAALTIITPMLILLSESSKPSTLVSQGKHINSFHEQKVTPVPDRSLFIHQDVMQSTEAVTPRKMIGYVEKKWNMSTTAAAARNVSAGP TEAPQPSPEPDDHSPKAADRVVDVWGRSADDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42785			unknown protein		Lus10002541 [exp]	0	1
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10023268 [exp]	3.3	0.9513
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10023002 [exp]	4.7	0.9498
AT1G15780			unknown protein		Lus10015321 [exp]	5.3	0.9087
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036942 [exp]	7.3	0.9231
AT5G45290			RING/U-box superfamily protein...		Lus10016428 [exp]	8.5	0.9392
AT3G11780			MD-2-related lipid recognition...		Lus10021256 [exp]	8.9	0.9303
AT5G42785			unknown protein		Lus10001961 [exp]	10.4	0.8873
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10039639 [exp]	13.3	0.8340
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10022130 [exp]	13.4	0.9178
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Lus10004210 [exp]	14.0	0.8607

Compare expression of checked genes

Lus10002541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.