Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16610 134 / 3e-35 RNPS1, SR45 arginine/serine-rich 45 (.1.2.3) AT1G79100 54 / 2e-09 arginine/serine-rich protein-related (.1) AT1G73530 51 / 2e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G27330 48 / 8e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G64200 50 / 9e-07 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT4G13850 46 / 3e-06 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT5G54580 46 / 5e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G23830 45 / 1e-05 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT5G06210 45 / 1e-05 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G13690 45 / 2e-05 ATE1 ATPase E1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027383 [exp] 246 / 5e-77 AT1G16610 156 / 7e-43 arginine/serine-rich 45 (.1.2.3) Lus10031786 [exp] 167 / 1e-47 AT1G16610 207 / 7e-63 arginine/serine-rich 45 (.1.2.3) Lus10031212 [exp] 166 / 4e-47 AT1G16610 210 / 6e-64 arginine/serine-rich 45 (.1.2.3) Lus10029426 [exp] 52 / 5e-07 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Lus10003593 [exp] 52 / 6e-07 AT5G54580 174 / 6e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10014802 [exp] 50 / 1e-06 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003957 [exp] 48 / 5e-06 AT5G64200 217 / 9e-70 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10023802 [exp] 48 / 1e-05 AT5G64200 217 / 1e-68 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10032591 [exp] 45 / 1e-05 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G143100 [exp] 169 / 4e-48 AT1G16610 169 / 3e-48 arginine/serine-rich 45 (.1.2.3) Potri.001G409800 [exp] 52 / 6e-08 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 52 / 1e-07 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G160300 [exp] 49 / 3e-07 AT2G27330 98 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G208500 [exp] 49 / 4e-07 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G319900 [exp] 49 / 5e-07 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.011G130300 [exp] 49 / 8e-07 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G095800 [exp] 49 / 1e-06 AT5G64200 204 / 5e-65 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.017G059000 [exp] 46 / 5e-06 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.005G165400 [exp] 48 / 6e-06 AT5G64200 202 / 2e-63 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10002542 pacid=23165485 polypeptide=Lus10002542 locus=Lus10002542.g ID=Lus10002542.BGIv1.0 annot-version=v1.0 ATGGCGAAACCATCTCGAGGCCGCCGTTCGCCACCGTCTGGTTCAGCTTCTTCAAAGTCTAGGTCGCGTTCTCGCTCTTCCTCAGGTTCAGATTCCCAGT CCAGCTCCCGCTCGCGTTCCAGATCTCCCGTGCGTTCACGCTCGCTCTCTCGTTCCAGATCGTTGTCCTCTTCGTCACTTTCTCGCAGTCCAAGCTCCGG TAGCCGCAGTCCTCGTCCTCAACGAAAGAAGAGTCCTGCTGCTGAAGTAGCTAGGCGAGGTCGCAGTCCACCGCCACAAGTGAAAAGGACATCTCCGCCA CTGAGGTGGTCGCTGATGTACCTCTTTCTCTTGAACCCAGGTAACTATGGTGAAGTTGTGCATGTGAATTTGGCAATGGACCGCACTGTTAATCTTCCAA AAGGATTTGGATACATTGAGTTTAATGTCAGAGCAGATGCTGAGAAGGCTCTTTCATACATGGATGGGGCTCAAATTGATGGTAATGTTGTGCGGGTTCG GTTTACATTACCCCCACGGCAGAAATTTTCTCCCCCTGCTAAGCCTTTAGCCACTAAACGAGATATTACAAAAACTGATGCTGCCAATACTGAAGTTGAG AAGGATGTACCAAAACGTCAAAGGGAAGCCTCTCCTCGAAGAAGATCTCCCATTACCCGGAGAGGTGGATCTCCCATTACTAGGAGAGGGGGGTCTCCTA GACGGCCACCAGATTCTCCTCCACGCAGGCGTGTTAATTCTCCTGGTCGTCGCCGTGTGGAGTCACCTTTTCGTCGAGGGGAAACTTCTCCAAGGCATAG ACTAGCATCCCCGGGCAGGGGTCGTTCTTCATCTCCTCCACCAAGAAGATTCAGATCACCTCAAAGGACCTCTCCACGAAGAGTGAGAGGCAGTCCTGTT CGTAGGCGATCTCCTCTACCTTTAAGAAGGCGCTCACCTCCTAGACGAGCCCGATCTCCTCCAAGAAGGTCTCCACTGCGTAGGCATAGCCGTTCTCCAA TTCGCCGGCCTTTACGCTCGCGGTCCAGATCACCTTCACCAAGGAGAGGCCGAGGACCACCGGCAAGACGTGGGAGATCATCATCTTACTCTGACTCGCC TAGCCCACGCAAGGTGCCTCGAAAGATCTCTAGGAGCCGCAGTCCTAAAAGGCCATTGAGAGGAAGAAGTAGCAGTAACAGCAGCAGCAGCAGATCGCCG CCTCGAATGCCATAA
AA sequence Show only first row Show all	>Lus10002542 pacid=23165485 polypeptide=Lus10002542 locus=Lus10002542.g ID=Lus10002542.BGIv1.0 annot-version=v1.0 MAKPSRGRRSPPSGSASSKSRSRSRSSSGSDSQSSSRSRSRSPVRSRSLSRSRSLSSSSLSRSPSSGSRSPRPQRKKSPAAEVARRGRSPPPQVKRTSPP LRWSLMYLFLLNPGNYGEVVHVNLAMDRTVNLPKGFGYIEFNVRADAEKALSYMDGAQIDGNVVRVRFTLPPRQKFSPPAKPLATKRDITKTDAANTEVE KDVPKRQREASPRRRSPITRRGGSPITRRGGSPRRPPDSPPRRRVNSPGRRRVESPFRRGETSPRHRLASPGRGRSSSPPPRRFRSPQRTSPRRVRGSPV RRRSPLPLRRRSPPRRARSPPRRSPLRRHSRSPIRRPLRSRSRSPSPRRGRGPPARRGRSSSYSDSPSPRKVPRKISRSRSPKRPLRGRSSSNSSSSRSP PRMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10002542 [exp]	0	1
AT3G10070		TAF12, TAFII58	TATA-ASSOCIATED FACTOR II 58, ...		Lus10003250 [exp]	2.8	0.9157
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10041728 [exp]	4.2	0.9272
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10030171 [exp]	4.6	0.9305
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Lus10011067 [exp]	5.5	0.9076
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022055 [exp]	6.6	0.8876
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10005074 [exp]	7.7	0.9148
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10040712 [exp]	8.7	0.9200
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016539 [exp]	9.9	0.9075
AT2G38730			Cyclophilin-like peptidyl-prol...		Lus10026161 [exp]	11.5	0.9115
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043478 [exp]	12.0	0.9107

Compare expression of checked genes

Lus10002542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.