Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12940 715 / 0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19895 157 / 6e-42 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027382 [exp] 454 / 6e-157 AT3G12940 493 / 6e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10034201 [exp] 140 / 1e-35 AT3G19895 662 / 0.0 RING/U-box superfamily protein (.1) Lus10000199 [exp] 83 / 1e-17 AT3G19895 352 / 3e-119 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G143000 [exp] 774 / 0 AT3G12940 779 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G085700 [exp] 151 / 9e-40 AT3G19895 707 / 0.0 RING/U-box superfamily protein (.1) Potri.010G171100 [exp] 148 / 2e-38 AT3G19895 701 / 0.0 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002543 pacid=23165504 polypeptide=Lus10002543 locus=Lus10002543.g ID=Lus10002543.BGIv1.0 annot-version=v1.0 ATGGCGGCCAGTGGCCTGCCAGCATTAGGCCGCGTGAAGCTAAGTGATCTTTTAGCCACCGAAGGCCTTCCTTCGGATTCTTACAAGTTATCAGTGTCAA CTTTGTCACGGTCTCTTGCTCAGTATTCCGCTGCAATCATTCAGTTTTCAGCCACTGATGGTGCTCTCCTGAGGTCTGGGTTAGATTCTGCTCGTCTTTA CTTTCACCAAAGACCATTCCCCAGTGGAGAGGAGATTCAAGGCGACGATTGCGAGTGGTGCAGGACCTCGGGCTATTATGCTAATCCTCGGTTGTGGCAG GAAACGTATGATTATAGACCAGGGCTCACTCCTACAGACCCTACCAACATCATGGAATTTCCTCCAGGAGGTTTGCCTGACATATTTTCTTTGCTGGCTA GAGCAGTTCGGGACATATTGGATGCAATAAGCTTCTTTTTAAATTTGCGTAGTTCTCCGTTTGCAGAAATACTTGATAATGTTCCCTTGAGGAGTCGAGA AATATCATCCTCAGTTCTGTCGGTTTGCTGTCATGCAAGGCCATCGTTTCAAGGAGCACTTGCACAACACCATAGTTTAACTGCACAAGAGGATGGCCAA ATGGGCATGTATTTGGACCATGATCACCAAGTGGACAAGAGTTTGTTATCGCTTGTCAAGTCAGATAAAGCAGGCTTGCATATACGAGATTTTAACGGTC GATGGGTACTTGTGGATGGTGATCTTGGTCCTCAAGAGGCTATTGTTTTCCCAGGACTTGCCCTCTACCAGGCAACCGCTGGTTATGTCAATCCTGCACT TCATAGAACAGAGATTAGTAGCATGGAGAGTAACATGTATGGACGTTGTTCTTTGTCATTTAAACTTATGCCGAAATCAATGACCAATCTTACTTCTTCA GAAATGAGAGCAGCAGGTCATGGCGTTGAATCCCAATTCCAGCTACCGATATCAGTGGATGATTTCATGCAGAGATCAAACTCAACTGATCACAACTTTA ACAAGCATGGCTTTCAAAGTTTCAGCTTCCCCTTGGCTCAAGACGGATCCACGAAGCCCATTACGAAGAGAAGAAGGAGTAATTCAGGATGCAAACCACT ACCACCGTCAAAGAGATTAAGGCTTGAAGCTCAAAGGGTCCTAAAGGAGAGAGTTCAGGACATCGCTGATAAGAAGGGCATAAAGCTTAGGTTCTGTAAT TTGAAAGAGTGCGAGAGTCATGTTCATGCTGTTGATAGTCCTTGTGCCAATATCAGAATGGAGATTGGCTGGCCGCCTGGCGTGCCATTTGTTCATCCTC ACGACTTACCTAACAAAGCAAAGATTGCCTTTCTTGAAGCATACGAGCCCGGTTGGACAGCAACTCAAGATTTTGATACTAGTATGATGGAATCAGGACG AGGCAGAGCCCGGAACCAGTCTGTTGTGCAGGAGCCCGGAATCAATTCTGAATGTTGCATGGACCCTGAAGCTGGATTGGCGTTCTGA
AA sequence Show only first row Show all	>Lus10002543 pacid=23165504 polypeptide=Lus10002543 locus=Lus10002543.g ID=Lus10002543.BGIv1.0 annot-version=v1.0 MAASGLPALGRVKLSDLLATEGLPSDSYKLSVSTLSRSLAQYSAAIIQFSATDGALLRSGLDSARLYFHQRPFPSGEEIQGDDCEWCRTSGYYANPRLWQ ETYDYRPGLTPTDPTNIMEFPPGGLPDIFSLLARAVRDILDAISFFLNLRSSPFAEILDNVPLRSREISSSVLSVCCHARPSFQGALAQHHSLTAQEDGQ MGMYLDHDHQVDKSLLSLVKSDKAGLHIRDFNGRWVLVDGDLGPQEAIVFPGLALYQATAGYVNPALHRTEISSMESNMYGRCSLSFKLMPKSMTNLTSS EMRAAGHGVESQFQLPISVDDFMQRSNSTDHNFNKHGFQSFSFPLAQDGSTKPITKRRRSNSGCKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCN LKECESHVHAVDSPCANIRMEIGWPPGVPFVHPHDLPNKAKIAFLEAYEPGWTATQDFDTSMMESGRGRARNQSVVQEPGINSECCMDPEAGLAF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12940			2-oxoglutarate (2OG) and Fe(II...		Lus10002543 [exp]	0	1
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10030207 [exp]	8.4	0.7270
AT5G48390		ATZIP4	Tetratricopeptide repeat (TPR)...		Lus10011130 [exp]	27.0	0.7134
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Lus10023464 [exp]	28.3	0.6812
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10037364 [exp]	37.9	0.6634
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Lus10036234 [exp]	38.1	0.7209
AT3G48120			unknown protein		Lus10042150 [exp]	54.3	0.6525
AT1G29220			transcriptional regulator fami...		Lus10029236 [exp]	77.9	0.6703
AT1G20670			DNA-binding bromodomain-contai...		Lus10030739 [exp]	115.0	0.6608
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Lus10040340 [exp]	127.6	0.6338
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10040530 [exp]	138.8	0.6525

Compare expression of checked genes

Lus10002543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.