Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12930 284 / 1e-97 Lojap-related protein (.1) AT1G67620 50 / 2e-07 Lojap-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027381 [exp] 464 / 2e-168 AT3G12930 280 / 5e-96 Lojap-related protein (.1) Lus10015822 [exp] 42 / 0.0001 AT1G67620 168 / 2e-53 Lojap-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G142900 [exp] 309 / 2e-107 AT3G12930 321 / 6e-112 Lojap-related protein (.1) Potri.001G458600 [exp] 306 / 6e-106 AT3G12930 301 / 6e-104 Lojap-related protein (.1) Potri.008G105700 [exp] 54 / 6e-09 AT1G67620 184 / 1e-59 Lojap-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF02410 [flax] [poplar] RsfS Ribosomal silencing factor during starvation
Representative CDS sequence Show only first row Show all	>Lus10002544 pacid=23165494 polypeptide=Lus10002544 locus=Lus10002544.g ID=Lus10002544.BGIv1.0 annot-version=v1.0 ATGATAGCAGCAGGGCACCCCTCTCTGCCCATCGTCGGCGCCAGTGCTTGTATTCGTTACTCCGGCGAGCTTACGCCCATCGAATCGAACTTCTTTAGAC GACTCGCTAAGCCTTCCAGGACGTTCTGCCATCAATGGGGTAGCCGAAAGCTCTGCTTCTCACAAGGAAAGAGTTGCAATTTCAAGCCAAGTTTTGCTCT TCAGAAAGACGCCTCTGACAACAACTTCTTAACGAATGCGGAAGACACCGACGAAGCGTTCGACGAATTGTTCAACAAGTATGGGAAAGTAGTGTTTAGA AGGAATGACCAAAAGCCTATAATCGCTGAGGTTGACGACGATGCTGAAACCTTATCATTTGCTGTGGAATTGGCCAAAGTTGCAAGTGATGTGAAAGCCG GAGACATCAAGGTTCTGTTTGTGAAGCCTCTGGTGTACTGGACTCGTTTTTTCATAATTGCCACAGCGTTTTCTCGTCCACAGATTGATGCAATTGGGTC GAGGATAAGAGATCTTGCTGAGAAGAAGTATGGAAAAGTTCCATCTGGAGACACAAAACCCAACTCATGGACCCTTTTGGACTTTGGTGATGTTGTGGTG CACATATTTCTTCCTCCGGAGAGAGATTTTTACAACTTAGAGGAGTTCTATGGCAATGCTATGCAAATTGAGCTCCCTTTCGAGAACCAGTCTTCTGGAT TACACAAATGA
AA sequence Show only first row Show all	>Lus10002544 pacid=23165494 polypeptide=Lus10002544 locus=Lus10002544.g ID=Lus10002544.BGIv1.0 annot-version=v1.0 MIAAGHPSLPIVGASACIRYSGELTPIESNFFRRLAKPSRTFCHQWGSRKLCFSQGKSCNFKPSFALQKDASDNNFLTNAEDTDEAFDELFNKYGKVVFR RNDQKPIIAEVDDDAETLSFAVELAKVASDVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDLAEKKYGKVPSGDTKPNSWTLLDFGDVVV HIFLPPERDFYNLEEFYGNAMQIELPFENQSSGLHK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12930			Lojap-related protein (.1)		Lus10002544 [exp]	0	1
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10004319 [exp]	3.9	0.9356
AT2G35410			RNA-binding (RRM/RBD/RNP motif...		Lus10035678 [exp]	6.5	0.9297
AT2G35410			RNA-binding (RRM/RBD/RNP motif...		Lus10037265 [exp]	7.5	0.9219
AT3G17170		RFC3	REGULATOR OF FATTY-ACID COMPOS...		Lus10017084 [exp]	8.2	0.9115
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Lus10028726 [exp]	9.2	0.9230
AT5G55580			Mitochondrial transcription te...		Lus10003775 [exp]	9.4	0.9268
AT5G27460			Tetratricopeptide repeat (TPR)...		Lus10020948 [exp]	10.3	0.8662
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	12.9	0.9312
AT3G20230			Ribosomal L18p/L5e family prot...		Lus10020797 [exp]	13.1	0.9100
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10014577 [exp]	13.7	0.9204

Compare expression of checked genes

Lus10002544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.