Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45140 952 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G17420 775 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G72520 761 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G67560 734 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G55020 632 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 605 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G04390 219 / 1e-58 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002547 [exp] 1047 / 0 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031810 [exp] 1037 / 0 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10039094 [exp] 1029 / 0 AT3G45140 946 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10041646 [exp] 999 / 0 AT3G45140 939 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10032087 [exp] 957 / 0 AT3G45140 894 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10027379 [exp] 907 / 0 AT1G72520 867 / 0.0 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10031236 [exp] 858 / 0 AT3G45140 805 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10027380 [exp] 811 / 0 AT1G04390 252 / 4e-71 BTB/POZ domain-containing protein (.1) Lus10031809 [exp] 805 / 0 AT3G45140 753 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015400 [exp] 1303 / 0 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015300 [exp] 1189 / 0 AT3G45140 943 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.017G046200 [exp] 1181 / 0 AT3G45140 979 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015500 [exp] 1177 / 0 AT3G45140 975 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.009G022400 [exp] 1117 / 0 AT3G45140 1008 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.010G057100 [exp] 793 / 0 AT1G67560 1144 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.008G178000 [exp] 792 / 0 AT1G67560 1155 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.001G167700 [exp] 789 / 0 AT1G17420 1444 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.013G022000 [exp] 633 / 0 AT1G55020 1311 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032700 [exp] 631 / 0 AT1G55020 1307 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain CL0321 [flax] [poplar] PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase
Representative CDS sequence Show only first row Show all	>Lus10002545 pacid=23165499 polypeptide=Lus10002545 locus=Lus10002545.g ID=Lus10002545.BGIv1.0 annot-version=v1.0 ATGATTGCTAAAAAGACGACGAGGACAATATCGCCGGCATGTAATTCGTCACCATCAATAGGCGAGCTGGTAGAAGAAGCAGAAGAAGTGAAGAACACAC ATAAAGTGAAAGCGTTAGTGACGGTTAAGGAAACGATTGGTGGGATGCTGGCAAGCTTAGGCATAGAGAGAGGGCTGGATGATATCAAAGACCTTCTTGG CCAAACTCTTCTCTTAGAGCTAGTCAGCGCTGACTTGGATCCTAAGACAGAGATGGAGAAGCCGACAGTGGAAGCTTATGCCCACCGGGTGGCTAAGAAG AAGGGCGGGGGAGAGGGGCGGCGGGAAGTGAAGTACGAGGCAGAGTTCGAGGTACGTGGAGATGAGTTTGGGGAAGTTGGAGGCATCTTCGTGGAGAATG AGCACCACAAGGAGATGTACCTTAGCCACATTCGGTTAGATGGCTTCCCCAATGGTCCCATCCATTTCACTTGTGACTCTTGGATTCATTCCAAGTTCAA TGACAAACGCAAGAGATTCTTCTTCACCTCCAAGTCATACTTACCGCAGAACACACCAGGTGGAGTGAAAAGGCTAAGGGATGAAGAGCTTGTATTTTTG CGAGGAAATGGGATGGGGCAACGGGAGCACGGTGAGCGAATTTACGACTACGATATCTACAATGATATTGGCGACCCAGACGTAAACCTCCAACTCGCAC GTCCACCCACGGGCGGCAAGGAGTATCCGTATCCCAGACGATGTCGTACTGGTCGGCACCGTTGTGAAGCAGATCCGTCGACGGAGAAAAGAGGGAGACG TTTCTACGTGCCGAGAGATGAGGCGTTTTCAGAAATGAAGCAGCTGACGTTCTCGGCAAAGACCATGTACTCTTTGTTTAACGCATTGATCCCATCACTA GGGAATGTGTTCTCGGATGCTGATCGTGGCTTTTCTTACTTCAAGTCCATTGATTCCCTCTTCAGTGATGGGATTGAGATGCCTCCTCTTTCCAAAGATG GTATCTGGAACTCCGTCCTCCCTCGCCTTTTCGCTGGCACAGGAGATGTTATGCGCTTCGAGCCCCCCGGCACATTGGAAAGGGATAAGTTCTTTTGGAT GAGGGATGAGGAATTTGCACGCCAGACGCTTGCTGGTCTTAACCCATATTGTTTGCAGTTGGTCACGGAATGGCCATTGATGAGCAAGCTTGACCCTAAA ATCTACGGTCCACCAGAATCAGCCATCACTACCGAACTCATTGAGTCAGAAATTGGGGGGATTTTATCAGTTAAAGAGGCAATTAAGCAGAAGAAGTTGT TCGTCCTAGATTATCATGATCTGCTGTTGCCATTTGTGAGCAAAGTGAGGGAACTCAAAGGCACCACGTTATACGGGTCGAGGACACTCTTCTTTTTAAC ACCTGATGGCACTTTAAGGCCACTCGCCATTGAGTTGTGTCGACCTCCTATGGATGGGAAGCCTGAGTGGAAACATGTGTACCGACCCTGTTGGCATTCA ACAGGTTGCTGGCTTTGGAGGTTAGCAAAGGCACATGTCCTTGCTCATGATTCTGGGGTTCACCAACTAGTTACCCATTGGCTAAGAACACATTGTGCGA CGGAGCCTTATATCATAGCAACCAACCGGCGGTTGAGCGTTGTACATCCTATTTACAGACTATTACACCCTCACTTCAGATACACAATGGAGATCAATTC CCTTGCTCGAGAGTCACTCATTAACGCTGGTGGTATCATTGAATCCTGTTTTACACCTGGCAAGTACGCCTTAGACATTTGCTCAGCTGCCTATGATCAG CTTTGGAGATTCGATCTTGAAGCTCTACCTAAAGACCTCGTCCGCAGGGGAATGGCTGTTGAAGATGAGAATTCACCTCATGGCCTTAAACTCACTATAC AGGATTACCCTTTTGCAAATGATGGTCTTGTTTTATGGGATGCCATCAAACAGTGGGTAACTGATTACGTCACTCACTACTATCCTGAACCTGACCTCGT CGAGACTGATGATGAGCTTCAATCATGGTGGACAGAGATTCGAACCTTAGGCCATGCAGACAAGAAGAAGGAACCATGGTGGCCTCAACTGGAAACACCA GAAGACCTCATCGATATCCTCACCATCATAATATGGGTAGCTTCAGGTCACCATGCCTCGGTCAACTTTGGACAATATACATTCGCAGGTTATTTCCCCA ACCGCCCAACTATTGCTAGAATCAAGATGCCCGATGAAGACCCAACAGATCAAGAGTGGGAATTCTTCCTTCACAAACCAGAATCAGTTCTTCTAGCAAC ATTCCCTTCCAAACTACAGGCTACAAGAGTGATGGCTGTACTGAGTGTGTTATCTAATCATTCCCCAGACGAAGAATATATTGGGGAAGCAATGGAGCAA TCTTGGAGTGACGATCCCATGATAAAGGCAGCGTTTGAGAAGTTCAGTGGAAGGCTAAAGGTGTTGGAAGGAATCATTGATGAAAGGAACGCTAACCCTG AGTTCAAGAACAGATGTGGAGCTGGCATCCTTCCTTATGAGCTCTTCAAGCCTTACTCTAAGCCAGGAGTCACAGCACAAGGAATTGGAACTAGTCAGCT TTTCAGAATCATGAAATCTTCGAAGCAAGCGGCAATTGGGGACACCACAGGCAGAGCTGCCCGTGTTCAGACACTCCACCGGCGTCTCCACACCGCTCTC AGCCTCGGCACTAGATTTCACGACGGAGAAGGTTGGAAATGGAAGTCTACGGATATCGAGATACAGAGGCATGTGCTTCGCTCGATTTCTTCCTTCCTCG ATAGCATCACGCCAGATTTTTCCCGCAATGCTCTAGTTAGGTATAAAAGTCAAGCTGCTGTAAGCATTGCTGTAAGTGTAGTAATAAAGTTAATGAACAC AATCCCCAATGAGATTCTGAGGCCTTATTTGTTATATATGGTTCGTCCTATATCATCTTTGTTGTCTGGTTATTCCCAACAAGTGTCCACTTCATCCGCT CATGCCCTGAGTATGATCTTCTCTGGTTTGAATGTGAAAGGAGACCACAATAAGGTCTGGGAGATGCTGACTGAGTCCAACTCTGTCCATCTCATTCTTA GTAATATGTCATCAGTTATTTCTGGTGCTGATGCTGAGACGATGGAGAATTTCTTGGAGATGATATCACTCTTGACTATAATACTACATTGGCCTGATAT TTCTGTTCAGACCGCGGTTCTTAAGTTGTATGTTGGAATAGCCCTGTGCGGCAATGGTACCAAAAAGCTTCTACAGGATGAACAAGTCTTAGGAATGATG GTTTCCTGCATGGGTAAGTCATATCCTCCTTCTGTGCGGGTAGAGGGGTTTAGACTCACAAAATGTTTGGCGACAAACGAAGAGGGATGTTTAAGAATGA TGAGCTTGTTTTGCCAGCCTTTAGTAAAAGCGATAATTGATGGAATGAGTGTATTGGAATTTCATCCAAGAAAGGCAGATGATGATCAAATGTCTTTGCT GGTGGAAGCTTGTCAGCTAGCTCGCATAGTTTGTTCGAGTGGGGAGCATCACAACAATTTTTGGAAGCATGGGATCGATCACGTCCTTGCTCATTTTGTT TCAGATGATTTCCATGATGAATTGCTTCAAGGTCCCTTGTCACTCGAGAAACTAATGCCCATTGCACGAGAGGCTCTTAAGCTCGATTTTCTTATTGTTA TCAGGCCTTACATATGGGAAATTCTTGGATGGCTTGCAGCACATTGTATGGAAGGTATCAACCATGACCTGTGTAGCCACGAAATTCACATTAACATCTT CATAACTTGCGCATGTTTGTCTTTTGTGGAGTCGATTCAAAAAAGCTTCCAAATGTGTGTAAATGATGTTGCTGACATATCCAAAGGTGGATCTGCAACG AGGGCAGTTCTGATGATGATATATTCTCGTTGCACGTACTTTGAGTCAAAGGCAAAGCTAACACTGACCAAAATGTTGAAGCCTGATGGAAAAGGGTTGG GTCTGGCTCAACATGATGTGCTATCTCAAAAAACATGTTGCTGGGAGGACAAAGAAGAGTGGGAAGGTGATGAAATGCTTCTATTGTGTGGCATGTGGGG ATTAACTGAGCTCGTGCTCTCTGGATGTGTTGTAAATCCTGATATGTTTGAACAAGTGGATTACCTTGAAGATCAGTTTCTTAGTACTCTTCGGGAAATC TGTATGTCTTCTAGATCTCATGGGCTGAGGTGGTACAGCGCTTACATGCTTAGTTGCTTTGGATTAAATGGTTTTCCTTGTAAACTTGGGCAGCGTATTG GGAGAGCACTGCATGAAACTGAATATTCAGATATGCAAGTCATTTTAAGGAGTGGGCAGAGTGTGAGGGTCCATAGAGTCATTCTTGCTATCAGGTGCCC ATCATTGTCGCCTCCTCAAGCATCACCTTCCAGTTAG
AA sequence Show only first row Show all	>Lus10002545 pacid=23165499 polypeptide=Lus10002545 locus=Lus10002545.g ID=Lus10002545.BGIv1.0 annot-version=v1.0 MIAKKTTRTISPACNSSPSIGELVEEAEEVKNTHKVKALVTVKETIGGMLASLGIERGLDDIKDLLGQTLLLELVSADLDPKTEMEKPTVEAYAHRVAKK KGGGEGRREVKYEAEFEVRGDEFGEVGGIFVENEHHKEMYLSHIRLDGFPNGPIHFTCDSWIHSKFNDKRKRFFFTSKSYLPQNTPGGVKRLRDEELVFL RGNGMGQREHGERIYDYDIYNDIGDPDVNLQLARPPTGGKEYPYPRRCRTGRHRCEADPSTEKRGRRFYVPRDEAFSEMKQLTFSAKTMYSLFNALIPSL GNVFSDADRGFSYFKSIDSLFSDGIEMPPLSKDGIWNSVLPRLFAGTGDVMRFEPPGTLERDKFFWMRDEEFARQTLAGLNPYCLQLVTEWPLMSKLDPK IYGPPESAITTELIESEIGGILSVKEAIKQKKLFVLDYHDLLLPFVSKVRELKGTTLYGSRTLFFLTPDGTLRPLAIELCRPPMDGKPEWKHVYRPCWHS TGCWLWRLAKAHVLAHDSGVHQLVTHWLRTHCATEPYIIATNRRLSVVHPIYRLLHPHFRYTMEINSLARESLINAGGIIESCFTPGKYALDICSAAYDQ LWRFDLEALPKDLVRRGMAVEDENSPHGLKLTIQDYPFANDGLVLWDAIKQWVTDYVTHYYPEPDLVETDDELQSWWTEIRTLGHADKKKEPWWPQLETP EDLIDILTIIIWVASGHHASVNFGQYTFAGYFPNRPTIARIKMPDEDPTDQEWEFFLHKPESVLLATFPSKLQATRVMAVLSVLSNHSPDEEYIGEAMEQ SWSDDPMIKAAFEKFSGRLKVLEGIIDERNANPEFKNRCGAGILPYELFKPYSKPGVTAQGIGTSQLFRIMKSSKQAAIGDTTGRAARVQTLHRRLHTAL SLGTRFHDGEGWKWKSTDIEIQRHVLRSISSFLDSITPDFSRNALVRYKSQAAVSIAVSVVIKLMNTIPNEILRPYLLYMVRPISSLLSGYSQQVSTSSA HALSMIFSGLNVKGDHNKVWEMLTESNSVHLILSNMSSVISGADAETMENFLEMISLLTIILHWPDISVQTAVLKLYVGIALCGNGTKKLLQDEQVLGMM VSCMGKSYPPSVRVEGFRLTKCLATNEEGCLRMMSLFCQPLVKAIIDGMSVLEFHPRKADDDQMSLLVEACQLARIVCSSGEHHNNFWKHGIDHVLAHFV SDDFHDELLQGPLSLEKLMPIAREALKLDFLIVIRPYIWEILGWLAAHCMEGINHDLCSHEIHINIFITCACLSFVESIQKSFQMCVNDVADISKGGSAT RAVLMMIYSRCTYFESKAKLTLTKMLKPDGKGLGLAQHDVLSQKTCCWEDKEEWEGDEMLLLCGMWGLTELVLSGCVVNPDMFEQVDYLEDQFLSTLREI CMSSRSHGLRWYSAYMLSCFGLNGFPCKLGQRIGRALHETEYSDMQVILRSGQSVRVHRVILAIRCPSLSPPQASPSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10002545 [exp]	0	1
AT5G20960		AT-AO1, AOalpha...	ARABIDOPSIS THALIANA ALDEHYDE ...		Lus10011279 [exp]	2.2	0.9237
AT5G36930			Disease resistance protein (TI...		Lus10026961 [exp]	3.0	0.9173
AT1G31710			Copper amine oxidase family pr...		Lus10010540 [exp]	5.2	0.9409
AT4G12310		CYP706A5	"cytochrome P450, family 706, ...		Lus10032210 [exp]	6.5	0.9347
					Lus10014719 [exp]	9.8	0.9333
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10040975 [exp]	12.8	0.9281
AT1G67260	TCP	TCP1	TCP family transcription facto...		Lus10034072 [exp]	15.2	0.9167
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10041138 [exp]	15.7	0.9188
AT1G15260			unknown protein		Lus10035880 [exp]	15.9	0.9203
AT5G50230			Transducin/WD40 repeat-like su...		Lus10015925 [exp]	16.2	0.9178

Compare expression of checked genes

Lus10002545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.