Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04390 207 / 2e-61 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027380 [exp] 298 / 5e-95 AT1G04390 252 / 4e-71 BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G457550 [exp] 272 / 1e-84 AT1G04390 432 / 6e-137 BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10002546 pacid=23165493 polypeptide=Lus10002546 locus=Lus10002546.g ID=Lus10002546.BGIv1.0 annot-version=v1.0 ATGTGTACTCGGGACCTGTCCCGGAGAAGAACATGTGAAGAAACTGAAGATTCTCACAAAGCATTGTGGTTTGAACCCCTATTGATTGTGCTTGGCAGAA TCCGTCCAAAGCGGGGTTCCCCTTTCCCCTGTTATGATCTTTCTCTTGCTCTTACTGCAGCCGGGCAAATGTTCTCGGACATCGTACTGGAGGCTAAAGA AAGTGAGCCGATTAGCTGGGAATGCAGAGTTTGTTCTGTATCTGTGTCCCATGTGCACGCTCACAAGGTTGTAGTGGGCTCGAGCTGTGATTATCTGAGG GCCATGTTTCAGTCTGGCATGCAAGAAAGTCATTCGAAGACCATAAAAGTTCCTGTTGGTTGGGAAGCCATGATCAAGTTATCGCATTGGTTTTACACTG ATGAGCTGCCTAACCCTCCTATTGGATGTGCATGGCTCAATATGGGCGCAGAGGAAAAGCTGCAAGCTTTGCAACCATATGTAGAACTTTACTGGCTTTC TGATTTCTGGTTCTTGGAAACTGTCCAAGACGCATGCTATCAAGTCGTTCTATCTCGGATGGATGCCGATGCAAAATTGTCTATCAAATTGCTGGATGTT GCTGCAAATTTGTCAGTCTGGAAACTAGCTGAAGTGGCTGCAGATAACCTAGCTCCGGCATATCGTCAATTATGCCAGTCTGGTGATTTTGATTTGTTGG ACGAAGGTCTCATTGACATGATTCGCGCTGCTTCTGTTAGGATCTCTAGAGACGGGCTTGAAGCTGTTTGA
AA sequence Show only first row Show all	>Lus10002546 pacid=23165493 polypeptide=Lus10002546 locus=Lus10002546.g ID=Lus10002546.BGIv1.0 annot-version=v1.0 MCTRDLSRRRTCEETEDSHKALWFEPLLIVLGRIRPKRGSPFPCYDLSLALTAAGQMFSDIVLEAKESEPISWECRVCSVSVSHVHAHKVVVGSSCDYLR AMFQSGMQESHSKTIKVPVGWEAMIKLSHWFYTDELPNPPIGCAWLNMGAEEKLQALQPYVELYWLSDFWFLETVQDACYQVVLSRMDADAKLSIKLLDV AANLSVWKLAEVAADNLAPAYRQLCQSGDFDLLDEGLIDMIRAASVRISRDGLEAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04390			BTB/POZ domain-containing prot...		Lus10002546 [exp]	0	1
AT4G03115			Mitochondrial substrate carrie...		Lus10024769 [exp]	5.3	0.9156
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10032529 [exp]	9.2	0.9087
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	9.8	0.9163
AT5G37290			ARM repeat superfamily protein...		Lus10008435 [exp]	11.5	0.9031
					Lus10022119 [exp]	12.1	0.8597
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10006828 [exp]	13.8	0.9076
AT4G10970			unknown protein		Lus10023075 [exp]	17.9	0.9084
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	18.4	0.8964
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10041957 [exp]	18.5	0.9021
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10026441 [exp]	21.0	0.8827

Compare expression of checked genes

Lus10002546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.