Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45140 947 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G17420 770 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G72520 768 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G67560 737 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G55020 685 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 645 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027379 [exp] 1456 / 0 AT1G72520 867 / 0.0 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10041646 [exp] 1340 / 0 AT3G45140 939 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031810 [exp] 1078 / 0 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10039094 [exp] 1075 / 0 AT3G45140 946 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002545 [exp] 1028 / 0 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10032087 [exp] 949 / 0 AT3G45140 894 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031236 [exp] 879 / 0 AT3G45140 805 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031809 [exp] 823 / 0 AT3G45140 753 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10013151 [exp] 775 / 0 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G046200 [exp] 1147 / 0 AT3G45140 979 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015500 [exp] 1140 / 0 AT3G45140 975 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015400 [exp] 1125 / 0 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.009G022400 [exp] 1104 / 0 AT3G45140 1008 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015300 [exp] 1027 / 0 AT3G45140 943 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.008G178000 [exp] 778 / 0 AT1G67560 1155 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.001G167700 [exp] 778 / 0 AT1G17420 1444 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.010G057100 [exp] 769 / 0 AT1G67560 1144 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.013G022000 [exp] 671 / 0 AT1G55020 1311 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032600 [exp] 669 / 0 AT1G55020 1284 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Lus10002547 pacid=23165502 polypeptide=Lus10002547 locus=Lus10002547.g ID=Lus10002547.BGIv1.0 annot-version=v1.0 ATGCAGAGTCTTCAAAATGTTCAGCAACCACCGGCTGTCGGTCGGTTCAACCAGCTGGGCGAGCAGAAGCCATTCATGAGCGGTGGCCTCTCGTCGCTTG CTACTCGGTCAACGGCCAGTAGGCAAGCGGCCGGCAACAATAACCATAACATGCAGGCGAAGCAGGGCGCGGTGGCCGGAAGTAGTGGTCGTCTGAGGCA TGCCGGAGCCGTGAAGGCTTTACCAGGTTTAAGTAACCTATTGGCGTCCACCAAGGTGAAGGCGGGGGGGACGGTGAAGCAGACTGTTGGTGGGTTTTTG GCTGACACAGTCCTTTTGCCCAACACTGTTGCTGACCTCATCGGCACTACTATGATCTTGGAGCTCATTCCCGCCGACCTTGACTCAAAGGGAAAGGAAA AGTCAACGGTAAGCTCGTTCGCACACTTCGCTGGCGTGAATGGTTCGGAGATCAGATACGAGGCATCCTTCGGCCTTCCCTCCGACTTCGGAACGGTCGG AGCGATGCGCGTCGAAAACCTGCATATTAGGGAGATGTTTCTCAAGGACATCGCCATTTCCGGCTTCCCCAACGGAACCGTCAACATCGAATGCGATTCC TGGGTTCCACCCAAACTCTCCGGCAAGCCTAAGAGGATTTTCTTCACTACCAAGTCCTACTTGCCATCTGATACGCCGACTGGATTGAAGAAGCTGCGAA GTGATGAACTTGTGGTATTGCGAGGGAGTGGTCAAGGTGAGAGGAAGAAAGGTGATAGGATATACGACTATGACGTTTACAATGATCTCGGATCACCTGA TTTAAGTGCCGGTTTGAAGAGACCTGTATTGGGTGGCAAAGAGCATCCTTACCCAAGGCGTTGCAGATCAGGACGACCACGGGCAACAAAAGATCCGGAG TCAGAGTCAAGGGGTCTTTACTTCTATGTGCCTCGCGATGAAGAGTTCTCTGAAATTAAGACTGCTCAATTTGGTGCCAAGACATTGTACTCGGTTCTAC ATGCCTTGGTGCCAACTCTCGAAACCATCCTCATCGACAAGGACCTTGGATTCCCACACTTCACTGCCATCAATGAGATGTTCGACCAAGGACTTAACTT GCCTCCCTACTCTCAAGCTACTTTGGTATCACTCCTCCCTACGCTCATCAGGAATTCTGCTGAAGCAAGCAATGACGTTTTGCAGTTTGAGGTCCCTCCA ACTATGGACAGAAACAGCTTTTTCTGGTTTACCGACGAGGAGTTTGCTCGCCAGACACTAGCTGGCGTAAACCCCTGCACCTTACAATTGATCACGGAAT GGCCACTAAAGGGTAATCTGGACCCATCTGTGTATGGTCCGCAAGAGTCTGGAATCACTAAAGAACTTATTGAGAGAGAAATCAAAGGTTATACAACATT AGAGGAGGCCCTGGAGCAAAAGAAACTTTTTATGCTTGACTATCATGATATCTTGTTACCGTTTGTGCCTAAAGCAAGAGAGGTTGAGGCCAGTACGTTG TATGGATCGCGGACTGTGTTCTATCTCTGCCCATCTGGGACACTAAGGCCTTTAGCAATTGAACTTACTCGACCACCGATGGATGGGAAGCCACAGTGGA AGAACGTTTATGTACCGAATTTTTCTTCTGCTACAGATGTCTGGTTGTGGAGGCTTGCCAAAGCTCATGTCCTTTCTCATGACTCTGCTTATCACCAACT TATTAGTCACTGGCTCAGAACTCATTGTTGCACAGAACCGTACATAATTGCAGCAAAACGCCAACTTAGTGCTATGCATCCCATCCACCGGTTGTTGAGC CCTCACTTCCGGTACACTATGGAAATTAATGCACTAGCACGACAAGCCCTTATCAACGCTGGTGGAGTTATTGAGTCAACTTTCTCCCCTCATCAGTACT CGATAGAAGCTAGCTCTGCTATTTATGATAGGGTGTGGAGATTTGACCACGAGGCTCTTCCTCGGGATCTGATCAGCCGTGGAATGGCTGTAGAGGATCC AACTGCTCCACACGGTGTGAAACTGACAATCGAAGACTACCCTTATGCAAACGATGGTCTGCTGATATGGGATTCTATCAAACAATGGGTGACAGACTAT GTTAATCAGTACTATCCCGACCAAAATCTCATAGCCTTGGATACAGAGCTTCAAGCTTGGTGGAATGAGGTTCGTAACGAGGGGCATGCAGACAAAAAGG ATGAGCCATGGTGGCCAAGTCTGAACACTGCTGAAGACCTTGTTGAGATTTGCACAACTATCATATGGGTAGCATCCGGTCACCACGCAGCTGTGAACTT TGGGCAGTATGCATACGCCGGATTCTTCCCAAACCAACCTACCATAAGCAGGCTAAAAATGCCTGATGAGGACCCCACAGAAGAGGAATGGAAGTTGTTC ATGCAGAAACCAGAGACAGTGCTTCTGACAACGTTTCCTTCGCAGATACAAGCTGCTAAGGTCATGGCTGTTCTGGACGTGCTGTCGAGTCATGCCCCTG ATGAAGAGTATCTCGGGGAGAAAATCGAGCCGGCTTGGGCTGATGAGCCCCAGATCAAGGCAGCTTTTGAGAAATTGAATGGCAGGATGAAGGAGGTTGA GGGAGAAATCGATTCCAGGAATGCAGATGCTTCTAGGAGGAACAGGAATGGAGCTGGTATCTATCCTTATGAGCTTCTGAAGCCATTCTCAGAAGGTGGA GTTACTGGAAAGGGAATCCCTTACAGCATCTCCATTTAA
AA sequence Show only first row Show all	>Lus10002547 pacid=23165502 polypeptide=Lus10002547 locus=Lus10002547.g ID=Lus10002547.BGIv1.0 annot-version=v1.0 MQSLQNVQQPPAVGRFNQLGEQKPFMSGGLSSLATRSTASRQAAGNNNHNMQAKQGAVAGSSGRLRHAGAVKALPGLSNLLASTKVKAGGTVKQTVGGFL ADTVLLPNTVADLIGTTMILELIPADLDSKGKEKSTVSSFAHFAGVNGSEIRYEASFGLPSDFGTVGAMRVENLHIREMFLKDIAISGFPNGTVNIECDS WVPPKLSGKPKRIFFTTKSYLPSDTPTGLKKLRSDELVVLRGSGQGERKKGDRIYDYDVYNDLGSPDLSAGLKRPVLGGKEHPYPRRCRSGRPRATKDPE SESRGLYFYVPRDEEFSEIKTAQFGAKTLYSVLHALVPTLETILIDKDLGFPHFTAINEMFDQGLNLPPYSQATLVSLLPTLIRNSAEASNDVLQFEVPP TMDRNSFFWFTDEEFARQTLAGVNPCTLQLITEWPLKGNLDPSVYGPQESGITKELIEREIKGYTTLEEALEQKKLFMLDYHDILLPFVPKAREVEASTL YGSRTVFYLCPSGTLRPLAIELTRPPMDGKPQWKNVYVPNFSSATDVWLWRLAKAHVLSHDSAYHQLISHWLRTHCCTEPYIIAAKRQLSAMHPIHRLLS PHFRYTMEINALARQALINAGGVIESTFSPHQYSIEASSAIYDRVWRFDHEALPRDLISRGMAVEDPTAPHGVKLTIEDYPYANDGLLIWDSIKQWVTDY VNQYYPDQNLIALDTELQAWWNEVRNEGHADKKDEPWWPSLNTAEDLVEICTTIIWVASGHHAAVNFGQYAYAGFFPNQPTISRLKMPDEDPTEEEWKLF MQKPETVLLTTFPSQIQAAKVMAVLDVLSSHAPDEEYLGEKIEPAWADEPQIKAAFEKLNGRMKEVEGEIDSRNADASRRNRNGAGIYPYELLKPFSEGG VTGKGIPYSISI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10002547 [exp]	0	1
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001018 [exp]	2.6	0.8675
AT4G35160			O-methyltransferase family pro...		Lus10023986 [exp]	7.2	0.8660
AT4G33925		SSN2	suppressor of sni1 2, unknown ...		Lus10019878 [exp]	10.2	0.8481
AT5G12900			unknown protein		Lus10031249 [exp]	10.2	0.8194
AT1G67550		URE	urease (.1)		Lus10036993 [exp]	13.9	0.8440
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10027617 [exp]	19.7	0.7437
AT5G01790			unknown protein		Lus10029060 [exp]	19.7	0.8398
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Lus10039405 [exp]	20.0	0.8252
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10005710 [exp]	21.5	0.8192
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10023979 [exp]	28.5	0.7642

Compare expression of checked genes

Lus10002547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.