Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38120 73 / 1e-12 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 71 / 4e-12 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 70 / 9e-12 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 69 / 1e-11 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 66 / 1e-10 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT5G63380 65 / 3e-10 AMP-dependent synthetase and ligase family protein (.1) AT1G65060 62 / 3e-09 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT1G20490 58 / 3e-08 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 57 / 9e-08 AMP-dependent synthetase and ligase family protein (.1) AT1G75960 55 / 4e-07 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027377 [exp] 1977 / 0 AT4G05160 95 / 2e-19 AMP-dependent synthetase and ligase family protein (.1) Lus10027378 [exp] 1119 / 0 AT3G23510 51 / 2e-06 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10002535 [exp] 203 / 1e-54 AT1G20510 79 / 3e-15 OPC-8:0 CoA ligase1 (.1.2) Lus10007144 [exp] 98 / 8e-22 ND 47 / 7e-06 Lus10012280 [exp] 76 / 2e-13 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015998 [exp] 75 / 3e-13 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10036994 [exp] 72 / 2e-12 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10037934 [exp] 69 / 2e-11 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10016135 [exp] 69 / 2e-11 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T085701 [exp] 1536 / 0 AT1G20480 91 / 3e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.003G210701 [exp] 1534 / 0 AT1G20480 91 / 3e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.003G210600 [exp] 1526 / 0 AT1G20480 91 / 4e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.005G227800 [exp] 198 / 7e-53 AT3G21230 47 / 3e-05 4-coumarate:CoA ligase 5 (.1) Potri.005G248500 [exp] 86 / 1e-16 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.012G094800 [exp] 81 / 3e-15 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G012800 [exp] 79 / 1e-14 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.017G112800 [exp] 76 / 1e-13 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G057000 [exp] 74 / 6e-13 AT5G63380 530 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 72 / 3e-12 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme CL0314 [flax] [poplar] PP-binding PF00550 [flax] [poplar] PP-binding Phosphopantetheine attachment site
Representative CDS sequence Show only first row Show all	>Lus10002549 pacid=23165484 polypeptide=Lus10002549 locus=Lus10002549.g ID=Lus10002549.BGIv1.0 annot-version=v1.0 ATGGAACCGTTGGTTCCAATTGACGACCAGTTCTCCAAGCTTCATCCATCTCTGCCATTGGACACAAGAATCTGTGTACTGGGAGCCGGCCCAAGCGGTG TTTCGGCAGCTTATGCACTGGCTAAGCTTGGTTACATGAATGTAACCGTCCTGGAGAAGCATCACACTGTTGGAGGATTGTGTGAATCTGTTGACATTGA AGGCAGGGTTTATGATTTGGGGGGACAAGTTCTGGCGAAGAACAGTGCGCCTGTCATATTTCACTTGGCAAAGGAAGCTGGATCAGAGCTGGAAGAGATG GACTCTCACAAGCTTGCCTTGATTGATAGTTCTACAGGGAAGTATCAGGATAATAAAGTTGCTGATGATTATGTCTCTGTCATTTCTCTCACGTTGGAAC TCCAGGACAAGGCAAAGGCTACCGGGAAAATTGGGGTTCATGCAGTGAGTGAATTGGCTTCAGATTTGACACCAACTTACCTGGAATCCCATGGGCTCAA GACTGTACCAAAGTCTGTAGCTTATGGGTACACTGCTTCAGGATATGGGTTTGTTCAGGATATGCCGTACGCTTACATTCACGAGTTCACCAGAACTTCC ATGGCTGGAAAGATCAGGAGGTTTAAGGACGGATATACCAGTCTGTGGAAGAAGTTGAGCGAGTCTCTCCCAATCGAGATCCATTGTCAGGCTGAAGTGC AGGAGATTCGACGCGATTCTGATGGTGTTAGAGTTGATGTCAAGAGGAGTAACGATGTAGTTGAAACCTTTGAGTTTGATAAGATCATTGTGTCCGGCTC TTTCCCTTTCAGAACTGGGAAAACCTACAGATCACCAATCAATCACTCATCAGCAGCAGAAGATGAAGTGATGGACCTCAGTGACCTTGAGAAGGAGCTG TTTAGTAAAGTTCAGACAATCGACTATTACACCACAGCTGTGAAGATCAAAGGACTAGAAGATATGCCAGTTGGGTTTTACTACTTTGGGGAGTTCATGG AGGATCCTGCAACAATCGGACACCCTATCGCATTGCAGAAGTACTATGCTGATTCTGATATCTTCTTGTTTTGGTCCTATGGAAACTCAGCTGACATCAT GGGACCAACTGTAACTGAGCTTGCCCTCAAAGTTGTTGCATCCATGGGAGCAAAAGCTGAGCAGGTTATTATGCAACGTAGATTCAAGTACTTCCCTCAT GTTTGCAGCGGAGATATGAAGAACGGGTTCTATGAGAGACTCGAAGATGAACTTCAAGGGCAAAGGAATACACTTTATGTTGGTGGGCTTATGGCATTTG AGCTCACAGAGAGGAACTCATCTTATTCCATGGCTCTCATCTGCAAGCATTTTGCAAATGACAATCCATTACCCATGTTTCCTTATGCTAAGAGCTTGTT CTCGCTACAATCCGATATTCGCACCAGGAGCCTGCAATATCCTAGGGAGATTCCAGGAGTGGAGTTCCCAGATCTTCCTAGCCTTGACGCATACCTGAAA CATTGGGGAACTTCAACATCCACAAGAGAAAAGACATTATATTCATGGATCAATGAAGAAGGGGCAGTTGTATCCCAGAGGACTTACGGTGAGCTAAACG ACAATGCTGCTTCCATTGCTCATAAGCTCTTGACGAGTAGAAAACCAGTTATCAAGGCTGGTGACAGGGTGATTCACAATGTAAAGATGATGAGAAGGGT TTATAAGAGCACTTCAAATACTGTGTTAGTTAGCTGGCTTCCTCAATACCATGATATGGGGCTAATTGGTGGACTTTTCACAGCTCTTGTTAGTGGTGGA ACTGCAGTTTTGTTCTCTCCATTGACATTCATCAAGAATCCACTCCTGTGGCTCCAGACCATGACCAGATATAGAGCTACTCACAGTGCTGGCCCGAACT TTGCCTTCGAGTTGATGGTTCGAAGACTGGAAGCAAGTGACAAGACTCGAAGCTTTGATCTTTCTTCCATGGTTTTTCTGATGATTGCTGCTGAGCCAGT GAGACAGAAAACCCTGAAGAGATTCATTGAACTGACTCGTCCTTTCGGACTTTCCCAAGAGGTGATGGCTCCTGGTTATGGTTTGGCAGAGAACTGTGTG TTTGTCTCATGTGCATATGGTGAACGAAAACCCATCATGATTGACTGGCAAGGAAGAGTGTCTTGCGGGTATGTGAATCCGAATGACAAAGATATCGACA TCAAAATTGTTGATCCTGAAAGTGGAGAAGAGCTGAATGAATGTGTAATGGAAGGAGAGATATGGATTAGCAGCCCAAGTGCTGGAATTGGTTATTGGGG TAAGGAAGAACTAAGCCAGAAGACCTTCAAAAATGAACTGTTGAGCAATCCTGGAAGAATATACACAAGAACCGGAGACTTGGGCAGAATCATTGATGGA AGCTTATTCATAACTGGACGAATCAAAGATCTTATCATTGTAGCTGGAAGGAACATTTACTCAGCTGATGTGGAGAAGACAGTTGAGAACTCATCCGATA TCCTAAGACCAGGCTGTTGTGCTGTAATTGGAGTTCCAGAGGATGTCTTGTCGGCGGAAGGGATCTCAGTTTCTGATGGCTCTGCTGATCAAGTAGGCTT GGTGGTGATTGCAGAAGTCAGAGAGATGAAACAAGTTGATAAAGATGAAGTTGCAGAACAGATTAAAGCCCGGGTAGCCGAAGAACATGGTGTTACAGTT GCTGCAGTCAAGCTAATCAAGCCAAGAACTCTTAGTAAAACAACATCTGGAAAAATCAAGAGATTTGAATGCCTCAAACAGTTCACAGAGGGGAGTCTGA GCATTGTTCCAGACGCAGCTTTGTCAAAGAGAAAGTCATTCAAGTCATTAAGCAAAGGGGAAAAATCACCTCTTTCTCAGACTGCGAGTTCTGCTACATT GAGCAACACAGACATTGTGGATTTTCTGAAGAAGATTGTATCTGAGCAGACAGGAGTTCCAGTCAAGAGCATCTCCACCACTGAAAACTTAGTTTCTTAT GGCATTGATTCGATCGGCGTCGTAAGAGCTGCTCAGAAGCTTTCCGACTTCCTTGGGGTACCAGTGGGAGCAGTAGACATCTTCTCAGCTACTTGCATTG CAGACCTGGCTAGCTTCTCTGAGAATCTCTTGATGAAATCTCAACCTCAGGGAGTGATAAACAACTCACAATCCTGCAGTTCAGATGCAAATGTTGATTC TGCAGAGTTATTAATTGAAGTTTCAAAGACTCGCCAGATCTTCATATGGTTCTTCCAACTTCTTGCCATAGCTTATGTCTCTACCCTGCTGAGCTTTCCG GCGTACCTGTCTATCTCAGCGTTTACAAGCATTCTTCAAAATGCTAACAGTCTGCTAGAGGGACCCTGGCTATCATTTATCATCCCTTTAGCTTTGGCCC CACTTGCTTGGATGCTCTGCATGGTTTCAACCTCCATTACCATTACCTTATTTGGTAAGCCATTCTTACAACCAAACTATGCTCTAACTCCAGAAGTGTT CATCTGGTCTATAGATTTTGTCAAGTGGTGGGCTCTTTACAAAGTTCAAGAGACTTCTTCAAAAGTCCTTGCTGTTCATCTGAGAGGAACAGTGTTTCTG AACTATTGGTTTGAGATGCTCGGAGCTCGGGTTGGGTCATCAGTTTTGCTTGACACAGTTGATATTACAGACCCATCTCTGGTCTCAATCGGAGATGGTG TTGTGATTGCCGAAGGAGCATTGATCCAAAGTCACGAGGTTAAGAATGAAGTTCTGAGCTTTCTTCCAATCAAAATTGGTAGAAACTCTTCAATTGGTCC ATATTCTGTACTCCAAAAGGGAAGTGTAGTGGGAGAACAAGTTGATATTCCTCCATTGCAGAAGGTTCAAAATGGTCTACCTGCATCCAAATCAAATGAG GAGCAATCAAAACTTCAACCTCAGAATTCATTGATGAATGCTGCTGTCCACTTCATAGGTGTCTACATGGTTGGTCTCCTCAGCAGTTTTTCTGCAGCAA TTGTATACTTACTGTACATTTGGTCGTCTCAAGAACAAGCATCCCTTCAATGTTTCTCATTCTTCTGCATCTCTGGAGCTTTCCATTGGATTCCATTCAC AATCATTGCTTATGCTGCAATGCTCTCTAATCTCCATCCGTCAAGCGCAGTTGCCTTTGCAGTCTCACTCGCTGTTTCTTACCTAGTACATGGCTTGATC CTCAGCATCTTGACAGGCATCGTCACCCATGTGCTTGCCGGTAGAGAGAGCAACCATTTGAACAGTTGGCTTCGCCATCGCCTCATTATCTCATGCCACT TGAAGTTTGCCAAACTCCTTTCAGGAACCGAGGCCTTCTGCGTGTATTTGCGCCTATTGGGTGCGAAAATTGGGAGACATTGTTCAATCAGAGCCATCAA TGCAGTCTCCGACCCACAACTCATCCGGATCGGTAATGGTGTCCATCTTGGCGACTTTAGCAGACTTGTTCCAGGGTACTATTCCTCAAGTGGGTACATT TCGAAAGCAGTCGAGGTACAAGATAATTCTGTAGTTGGAAGCCAAAGCATCATCCTACCAGGTGCTGTCATCCAGAACAATGTCATTCTCGGAGCTCTTT CTGTTGCTCCAACAAACTCCATACTCCAAAGGGGTGGCATTTACATCGGATCTCAAGCTCCTATAATGATCAAGAACACAATGCACTCTCTAGATGACAG GATAGAAGAAATGGACACCAAATACAAAAAAATCATTGGCAACCTAGCAGCCAGTTTAGCTGCAACCACTCTAAAAGTTAAATCCAGGTACAAATCTCTC CTAATTTATAACTATGATCTGAGTGTGCTTTACGATTTTAAGTTCAAAAAATCTCATGGATTTAACTACTGTCAGGTACTTCCATCGAATTGGAGTGAGC GGAAAGGGCCACCTCAAGATATATGA
AA sequence Show only first row Show all	>Lus10002549 pacid=23165484 polypeptide=Lus10002549 locus=Lus10002549.g ID=Lus10002549.BGIv1.0 annot-version=v1.0 MEPLVPIDDQFSKLHPSLPLDTRICVLGAGPSGVSAAYALAKLGYMNVTVLEKHHTVGGLCESVDIEGRVYDLGGQVLAKNSAPVIFHLAKEAGSELEEM DSHKLALIDSSTGKYQDNKVADDYVSVISLTLELQDKAKATGKIGVHAVSELASDLTPTYLESHGLKTVPKSVAYGYTASGYGFVQDMPYAYIHEFTRTS MAGKIRRFKDGYTSLWKKLSESLPIEIHCQAEVQEIRRDSDGVRVDVKRSNDVVETFEFDKIIVSGSFPFRTGKTYRSPINHSSAAEDEVMDLSDLEKEL FSKVQTIDYYTTAVKIKGLEDMPVGFYYFGEFMEDPATIGHPIALQKYYADSDIFLFWSYGNSADIMGPTVTELALKVVASMGAKAEQVIMQRRFKYFPH VCSGDMKNGFYERLEDELQGQRNTLYVGGLMAFELTERNSSYSMALICKHFANDNPLPMFPYAKSLFSLQSDIRTRSLQYPREIPGVEFPDLPSLDAYLK HWGTSTSTREKTLYSWINEEGAVVSQRTYGELNDNAASIAHKLLTSRKPVIKAGDRVIHNVKMMRRVYKSTSNTVLVSWLPQYHDMGLIGGLFTALVSGG TAVLFSPLTFIKNPLLWLQTMTRYRATHSAGPNFAFELMVRRLEASDKTRSFDLSSMVFLMIAAEPVRQKTLKRFIELTRPFGLSQEVMAPGYGLAENCV FVSCAYGERKPIMIDWQGRVSCGYVNPNDKDIDIKIVDPESGEELNECVMEGEIWISSPSAGIGYWGKEELSQKTFKNELLSNPGRIYTRTGDLGRIIDG SLFITGRIKDLIIVAGRNIYSADVEKTVENSSDILRPGCCAVIGVPEDVLSAEGISVSDGSADQVGLVVIAEVREMKQVDKDEVAEQIKARVAEEHGVTV AAVKLIKPRTLSKTTSGKIKRFECLKQFTEGSLSIVPDAALSKRKSFKSLSKGEKSPLSQTASSATLSNTDIVDFLKKIVSEQTGVPVKSISTTENLVSY GIDSIGVVRAAQKLSDFLGVPVGAVDIFSATCIADLASFSENLLMKSQPQGVINNSQSCSSDANVDSAELLIEVSKTRQIFIWFFQLLAIAYVSTLLSFP AYLSISAFTSILQNANSLLEGPWLSFIIPLALAPLAWMLCMVSTSITITLFGKPFLQPNYALTPEVFIWSIDFVKWWALYKVQETSSKVLAVHLRGTVFL NYWFEMLGARVGSSVLLDTVDITDPSLVSIGDGVVIAEGALIQSHEVKNEVLSFLPIKIGRNSSIGPYSVLQKGSVVGEQVDIPPLQKVQNGLPASKSNE EQSKLQPQNSLMNAAVHFIGVYMVGLLSSFSAAIVYLLYIWSSQEQASLQCFSFFCISGAFHWIPFTIIAYAAMLSNLHPSSAVAFAVSLAVSYLVHGLI LSILTGIVTHVLAGRESNHLNSWLRHRLIISCHLKFAKLLSGTEAFCVYLRLLGAKIGRHCSIRAINAVSDPQLIRIGNGVHLGDFSRLVPGYYSSSGYI SKAVEVQDNSVVGSQSIILPGAVIQNNVILGALSVAPTNSILQRGGIYIGSQAPIMIKNTMHSLDDRIEEMDTKYKKIIGNLAASLAATTLKVKSRYKSL LIYNYDLSVLYDFKFKKSHGFNYCQVLPSNWSERKGPPQDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05160			AMP-dependent synthetase and l...		Lus10002549 [exp]	0	1
AT4G05160			AMP-dependent synthetase and l...		Lus10027377 [exp]	1.0	0.8509
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Lus10027378 [exp]	2.2	0.8110
AT1G22460			O-fucosyltransferase family pr...		Lus10008719 [exp]	4.9	0.7996
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020215 [exp]	5.3	0.8212
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Lus10014551 [exp]	5.7	0.8170
AT1G79640			Protein kinase superfamily pro...		Lus10026108 [exp]	9.8	0.8137
AT5G58510			unknown protein		Lus10031857 [exp]	11.0	0.7597
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10013393 [exp]	13.7	0.7486
AT3G11090	AS2	LBD21	LOB domain-containing protein ...		Lus10028986 [exp]	20.7	0.7588
AT5G14430			S-adenosyl-L-methionine-depend...		Lus10022291 [exp]	20.7	0.7677

Compare expression of checked genes

Lus10002549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.