Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027377 [exp] 481 / 4e-159 AT4G05160 95 / 2e-19 AMP-dependent synthetase and ligase family protein (.1) Lus10002549 [exp] 47 / 1e-05 AT4G05160 74 / 5e-13 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G210600 [exp] 353 / 4e-112 AT1G20480 91 / 4e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.T085701 [exp] 353 / 6e-112 AT1G20480 91 / 3e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.003G210701 [exp] 351 / 2e-111 AT1G20480 91 / 3e-18 AMP-dependent synthetase and ligase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002550 pacid=23165501 polypeptide=Lus10002550 locus=Lus10002550.g ID=Lus10002550.BGIv1.0 annot-version=v1.0 ATGGCAGCATCAATCGTGCACAACAACAAAAAGGATGCAAAGAAGGTGACTTTAGCAAGAACATGGTACCAAACCACGTGGGCGACTCTTGTTCAGCCAT TTCTACAAACCCTCGTCCCGCATTTCCTAATTGGCCTGATAATCTCCCTGCCTCTCAATTGGGCACTCTCCTTGAAAAACACTCAACAACTTCATTACTT CCTCCCAATAATCTGGCTTTCCTCGGGATTTCTCTCAGCCATAGCATGCATCGTGGCGAAGTGGGTCCTCGTAGGAACCAAAAAGGAAGGCGAAACAGTC TATTTATGGAGCATATCCGTATTCATGGACACAGTCTGGCAAGCTATCAGAACAATAACCGGAGACTACTTCGTGGAAATGGTATGCGGGTCGATTTGGT TCAATTTGTGGGTAAAGCTAATGGGGACGGAGGTTGAGTTGGGTGAAGGAGCTTACATTGACTCCATGGGAGCTACTCTGAATCCGGAGATGGTGGAGAT TGAGAGAGGCGGTTGCATTGGAAAGGAAGCTCTGTTGTTCGGACACATCTATGAAGGTGAAGATGGGAAAGTGAAGTTTGGGAAGATTAGCGTGGGAGAA GGCGGGTATATAGGGAGCAGAGCGATCGCCATGCCTGGAGTGAGAATTGAGAGTGGTGGCAGCCTGGGTGCTCTGTCTCTGGCTATGAAGGAAGAAATTA TTAGGTGTAGGTACTAA
AA sequence Show only first row Show all	>Lus10002550 pacid=23165501 polypeptide=Lus10002550 locus=Lus10002550.g ID=Lus10002550.BGIv1.0 annot-version=v1.0 MAASIVHNNKKDAKKVTLARTWYQTTWATLVQPFLQTLVPHFLIGLIISLPLNWALSLKNTQQLHYFLPIIWLSSGFLSAIACIVAKWVLVGTKKEGETV YLWSISVFMDTVWQAIRTITGDYFVEMVCGSIWFNLWVKLMGTEVELGEGAYIDSMGATLNPEMVEIERGGCIGKEALLFGHIYEGEDGKVKFGKISVGE GGYIGSRAIAMPGVRIESGGSLGALSLAMKEEIIRCRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002550 [exp]	0	1
AT2G19580		TET2	tetraspanin2 (.1)		Lus10040551 [exp]	6.5	0.8091
AT5G27690			Heavy metal transport/detoxifi...		Lus10033469 [exp]	21.4	0.7943
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10024279 [exp]	23.0	0.7523
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039701 [exp]	24.0	0.7921
AT3G21460			Glutaredoxin family protein (....		Lus10012815 [exp]	28.5	0.7649
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Lus10034025 [exp]	33.5	0.7737
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10014518 [exp]	43.4	0.7636
AT4G34180			Cyclase family protein (.1)		Lus10001508 [exp]	47.9	0.7552
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043297 [exp]	48.1	0.7473
AT1G07710			Ankyrin repeat family protein ...		Lus10025289 [exp]	59.2	0.7489

Compare expression of checked genes

Lus10002550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.