Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20820 454 / 3e-160 Leucine-rich repeat (LRR) family protein (.1) AT5G12940 439 / 5e-154 Leucine-rich repeat (LRR) family protein (.1) AT3G12610 380 / 7e-131 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT2G26380 178 / 2e-51 Leucine-rich repeat (LRR) family protein (.1) AT5G23400 172 / 2e-48 Leucine-rich repeat (LRR) family protein (.1) AT1G33590 170 / 3e-48 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 164 / 6e-46 Leucine-rich repeat (LRR) family protein (.1) AT1G33610 160 / 2e-44 Leucine-rich repeat (LRR) family protein (.1) AT1G33670 153 / 5e-42 Leucine-rich repeat (LRR) family protein (.1) AT3G12145 145 / 2e-40 FLOR1, FLR1 FLOR1, Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031824 [exp] 500 / 3e-178 AT3G20820 527 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10010949 [exp] 391 / 3e-135 AT3G20820 440 / 8e-155 Leucine-rich repeat (LRR) family protein (.1) Lus10037705 [exp] 379 / 1e-130 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10031377 [exp] 375 / 3e-129 AT3G20820 433 / 3e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10015700 [exp] 287 / 7e-96 AT3G12610 343 / 3e-118 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10031254 [exp] 253 / 1e-83 AT3G20820 269 / 2e-90 Leucine-rich repeat (LRR) family protein (.1) Lus10021028 [exp] 157 / 2e-44 AT5G06860 362 / 2e-125 polygalacturonase inhibiting protein 1 (.1) Lus10023824 [exp] 155 / 9e-44 AT5G06860 366 / 1e-126 polygalacturonase inhibiting protein 1 (.1) Lus10041064 [exp] 152 / 6e-42 AT1G33590 488 / 3e-171 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G017500 [exp] 456 / 7e-161 AT3G20820 504 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.003G207000 [exp] 446 / 7e-157 AT3G20820 488 / 1e-173 Leucine-rich repeat (LRR) family protein (.1) Potri.009G064300 [exp] 434 / 2e-152 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Potri.001G269800 [exp] 419 / 2e-146 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.007G001000 [exp] 190 / 9e-55 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.013G098900 [exp] 164 / 5e-46 AT1G33590 582 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.013G098850 [exp] 162 / 2e-45 AT1G33590 629 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016700 [exp] 163 / 1e-44 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.006G058600 [exp] 149 / 8e-42 AT5G06860 383 / 1e-133 polygalacturonase inhibiting protein 1 (.1) Potri.005G117700 [exp] 151 / 2e-40 AT3G24240 240 / 1e-67 Leucine-rich repeat receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002551 pacid=23165489 polypeptide=Lus10002551 locus=Lus10002551.g ID=Lus10002551.BGIv1.0 annot-version=v1.0 ATGGCATCATCTCTCCTACCTACAATCCTACTGATCATCCTGCTCATCAACATCTCGGCCACCGCTGTCAACGCCTGCACTCCCTCCGACAGGGCGGCAC TCCTAGCCTTTAAGTCAGCTCTCCACGAGCCTTACTTGGGAATCTTCAAATCCTGGACTGGCAATGACTGCTGCAAAGACTGGTATGGCGTCAGCTGCAA CCCTGAAACGAAACGGGTCGCCGATATTACCCTCCGTGGGAAATCAGAGGATCCCCTGTTCCAGAAAGCTGGTCGTTCCGGAGTAATGACCGGCACCATT TCCCCTTCTATCTGCAAGCTCAAGTACCTTTCGGGTCTCACACTATCCGACTGGGATGGAATCTCAGGCGAGATCCCTCGTTGCATCACTGCAATCCCTT TCCTCCGAATCCTCGACCTGGTGGGCAATAGCATCTCCGGCCAGCTTCCTGTGGATATTAGCCGCCTCCGCAGGCTCACCATTCTAAACCTTGCGGACAA TAAAATAATTGGTCAGATCCCCAAGCCGTTGACCAACTGTTCTGGGTTGATGCATCTTGATCTGCGGAACAACCAGATCAACGGTCCGATCCCGGTCGAG TTCGGTCGGCTTGTGATGTTGAGCCGAGCGCTTCTGAGCGGGAACTACCTGACCGGTGCGATCCCCGATTCCATAGGTGGCATGAAGCGGCTCTCGCATT TGGACCTCTCACTGAACAAGCTATCCGGGGTGATTCCGGCGGCGATCGGGAAGATGTCGGTGCTGGCGACGCTGAGCCTGAACGGAAACTCGCTGTCAGG GAACATACCGGCGAACCTATTGAGTTCTTCGGTTAGCTATTTGAATCTGAGCAGTAATGCGTTGGAAGGGACGCTGCCGGAGTTCGGGCCGCGGTCGTAC TTCACGGAGCTGGATCTTTCGCGTAATAAGTTGAAAGGTGGGATACCGGCGTCGATTTCGAGCGCGTCGTACATTGGTCACTTGGATGTGAGTCACAACC ATCTGTGTGGGAAGATTCCGGTGGGGTCACCGGCTGACCACCTTGAGGCGGATTCCTTTACTGGGAATGACTGTCTATGTGGCAGGCCGCTTGGTCCTTG TCCCGCTAAACGCAAGGGCAAAGTTGCAAAGAAGAAGGGTGGAGGGAAATGA
AA sequence Show only first row Show all	>Lus10002551 pacid=23165489 polypeptide=Lus10002551 locus=Lus10002551.g ID=Lus10002551.BGIv1.0 annot-version=v1.0 MASSLLPTILLIILLINISATAVNACTPSDRAALLAFKSALHEPYLGIFKSWTGNDCCKDWYGVSCNPETKRVADITLRGKSEDPLFQKAGRSGVMTGTI SPSICKLKYLSGLTLSDWDGISGEIPRCITAIPFLRILDLVGNSISGQLPVDISRLRRLTILNLADNKIIGQIPKPLTNCSGLMHLDLRNNQINGPIPVE FGRLVMLSRALLSGNYLTGAIPDSIGGMKRLSHLDLSLNKLSGVIPAAIGKMSVLATLSLNGNSLSGNIPANLLSSSVSYLNLSSNALEGTLPEFGPRSY FTELDLSRNKLKGGIPASISSASYIGHLDVSHNHLCGKIPVGSPADHLEADSFTGNDCLCGRPLGPCPAKRKGKVAKKKGGGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10002551 [exp]	0	1
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001752 [exp]	1.4	0.9898
AT3G14470			NB-ARC domain-containing disea...		Lus10002609 [exp]	2.0	0.9866
AT2G43870			Pectin lyase-like superfamily ...		Lus10022530 [exp]	2.4	0.9874
AT5G54370			Late embryogenesis abundant (L...		Lus10026972 [exp]	3.5	0.9867
AT1G50720			Stigma-specific Stig1 family p...		Lus10043047 [exp]	3.9	0.9852
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011746 [exp]	5.9	0.9823
AT4G16563			Eukaryotic aspartyl protease f...		Lus10000725 [exp]	6.2	0.9715
AT4G37160		SKS15	SKU5 similar 15 (.1)		Lus10019642 [exp]	6.3	0.9814
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031377 [exp]	6.5	0.9844
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10037572 [exp]	6.6	0.9780

Compare expression of checked genes

Lus10002551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.