Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22410 276 / 2e-88 SLO1 SLOW GROWTH 1 (.1) AT3G05240 184 / 3e-54 MEF19 mitochondrial editing factor 19 (.1) AT2G29760 177 / 7e-51 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 175 / 4e-50 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20540 166 / 6e-48 MEF21 mitochondrial editing factor 21 (.1) AT2G34400 166 / 3e-47 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G66520 162 / 7e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 160 / 4e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G01510 158 / 1e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G36730 155 / 6e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018223 [exp] 184 / 2e-53 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 182 / 1e-52 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 179 / 2e-51 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020918 [exp] 172 / 1e-49 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004052 [exp] 167 / 2e-47 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10002024 [exp] 164 / 3e-47 AT5G56310 344 / 6e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002288 [exp] 165 / 6e-47 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10007341 [exp] 164 / 8e-47 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10014298 [exp] 160 / 5e-45 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G019500 [exp] 317 / 3e-104 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.009G044700 [exp] 190 / 1e-55 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G217900 [exp] 180 / 2e-52 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.018G040100 [exp] 180 / 4e-52 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 177 / 8e-51 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 176 / 1e-50 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G001000 [exp] 174 / 4e-50 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.015G034900 [exp] 167 / 1e-48 AT4G21065 370 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.017G083900 [exp] 166 / 4e-48 AT2G36730 552 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G073100 [exp] 166 / 1e-47 AT5G08305 600 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10002552 pacid=23165488 polypeptide=Lus10002552 locus=Lus10002552.g ID=Lus10002552.BGIv1.0 annot-version=v1.0 ATGAAGCAGGTTCAGTCACAAATGATCCTCACGGAGGTAATCAGAGACAGGCTAGCTTCAAGTCGTTTAGTTGCGTTTTGTGCGATTTCAGAATCGAGGG ACATTGATTACTGTATCTCGATTTTGAATTCGGTTGAGAACCCCATTTTGTTCTCGTGGAATTTGGCCTCCAGAGGTTGTGTAGAGAGTGGTAAGCCTGA AGGGGCATTGGTTCTGTACAAGAGGATGTTGGGGCGCGGGTTTAGGCCTGATAGTTATACATACCCGTTGTTGTTGAATGCTTGTGCTGGCTTGGGATCT TGTGATTTGGGTCTTCAGATTCATGGGCATGTTTTGAAGTTTGGGTTTGATGAGGTTGTGGTCGTGCAAAATGCTACGATCCATATGTTTGCCACGATTG GGGAATTGGGGCTTGCACGCCAGGTGTTTGATGAAAGTTCTGTCAGAGATAAGGTTTCGTGGAATTCGTTGATTAATGGGTATGCTAAGAAGGGGAAGGC AAAGGAGGCGATTGGTATTTATGATGAAATGATGGAGGAGGGAGTTAAGCCTGATGAGGTGACAATGGTTGGTGTTATTCTGTCATGTGCACAGTTGGAG AACTTGAAACTAGGGAGAGGTTTTCATCGCTACATTGAAGAGAACAGGCTGAGATTAACGGTTCCCCTCACGAATGCGCTTTTGGATATGTACATGAAAT GTGGTGATCTTGAGGCAGCAAGATCTCTGTTTAATATGTCAACAGAGAAAACTGTTGTATCATGGACTACAATGATTATTGGGTATTCGAAGTGA
AA sequence Show only first row Show all	>Lus10002552 pacid=23165488 polypeptide=Lus10002552 locus=Lus10002552.g ID=Lus10002552.BGIv1.0 annot-version=v1.0 MKQVQSQMILTEVIRDRLASSRLVAFCAISESRDIDYCISILNSVENPILFSWNLASRGCVESGKPEGALVLYKRMLGRGFRPDSYTYPLLLNACAGLGS CDLGLQIHGHVLKFGFDEVVVVQNATIHMFATIGELGLARQVFDESSVRDKVSWNSLINGYAKKGKAKEAIGIYDEMMEEGVKPDEVTMVGVILSCAQLE NLKLGRGFHRYIEENRLRLTVPLTNALLDMYMKCGDLEAARSLFNMSTEKTVVSWTTMIIGYSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Lus10002552 [exp]	0	1
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	7.7	0.9231
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016333 [exp]	9.4	0.9183
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10037798 [exp]	10.7	0.8475
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Lus10002553 [exp]	13.4	0.8705
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10006876 [exp]	15.2	0.9180
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	20.2	0.9140
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10030522 [exp]	22.2	0.8824
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	22.9	0.9112
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10004531 [exp]	23.2	0.9076
AT2G34357			ARM repeat superfamily protein...		Lus10041232 [exp]	24.4	0.9065

Compare expression of checked genes

Lus10002552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.