Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22410 365 / 2e-122 SLO1 SLOW GROWTH 1 (.1) AT5G66520 261 / 1e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56310 258 / 2e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 258 / 3e-81 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15930 258 / 1e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 255 / 6e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 249 / 2e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02980 247 / 2e-77 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 249 / 7e-77 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59200 242 / 5e-76 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040680 [exp] 259 / 1e-80 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 253 / 2e-79 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 253 / 3e-79 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10010320 [exp] 252 / 3e-79 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10017243 [exp] 249 / 5e-79 AT1G13410 539 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004052 [exp] 251 / 6e-79 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018223 [exp] 254 / 7e-79 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021068 [exp] 248 / 2e-78 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021069 [exp] 248 / 2e-78 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G019500 [exp] 397 / 4e-135 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.018G071800 [exp] 293 / 7e-94 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G103600 [exp] 278 / 5e-89 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G252400 [exp] 268 / 6e-87 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G031600 [exp] 271 / 3e-85 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 269 / 1e-84 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 266 / 6e-84 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 265 / 2e-83 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 264 / 4e-83 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G088600 [exp] 262 / 2e-82 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10002553 pacid=23165505 polypeptide=Lus10002553 locus=Lus10002553.g ID=Lus10002553.BGIv1.0 annot-version=v1.0 ATGAGATGCAAGCTTGCTATAGAGCCTGATAAGGTAACTATGGTTCATTGTTTATGTGCATGTTCGCAGCTTGGAGCACTTGGTACTGGAATGTGGATTC ATCGGTATGTCGAAAAGCACCAGATCCCTGTAGATGTTGCTTTAGGGATAGCTTTAGTTGACATGTATGCAAAGTGTGGGAACCTAACTAAGGCTCTTGC TGTTTTCCTCAAGATGCGAGAGACAAACACGATGACTTGGACAGCTCTGATTTGTGGTTTAGCGTTCCATGGACATGCACTTGATGCTATATCTTACTTC TTGAAGATGGGTGACACCGGCTTGATGCCAGATGAAATCACCTTCATTGGTGTACTGTCTGCTTGTTTCCATGGAGGATTGGTGGATGAAGGTTGTGCGT ACTTCGGCCAAATGACGTCCAAATTCGACCTCCACCCTCAGCTCAAACACTACTCTTGCATGGTGGATCTTCTGGGTAGGGCTGGTTTACTGAAAGAGGC TCTAGATTTTATTGAAAGCATGCCAATGGTGGCAGATGCTGGAGTGTGGGGTGCTCTTTTCTTCGCCTGTAAGATTCATGGAAATATTCCTATAGCTGAA CGGGCAGCTTTGAAGCTTCTTGAGTTGGATCCCAACGACAGTGGAAATTATGTGTTACTCGCAACAATTTATAGAGAGGCCAATATGTTTGAAGAGGGCA ACAATGTGATGAAGATAATGCAGGAAAGAAGAGTGGAGAAGATTCCTGGCAGTAGTTCCATTGAAGTTGGTGGCATTTTTTATGAGTTTATTGTTAGGGA TAGATCACACACAAAAACTGAACAGATATACGAGTGCTTAGCTCAACTGTTTAAGCAGCAGGGGAACCGTTTAAGCAGCAGGAGTCACAGAAACTTGAAG TGGACTGTAATAGTTTAG
AA sequence Show only first row Show all	>Lus10002553 pacid=23165505 polypeptide=Lus10002553 locus=Lus10002553.g ID=Lus10002553.BGIv1.0 annot-version=v1.0 MRCKLAIEPDKVTMVHCLCACSQLGALGTGMWIHRYVEKHQIPVDVALGIALVDMYAKCGNLTKALAVFLKMRETNTMTWTALICGLAFHGHALDAISYF LKMGDTGLMPDEITFIGVLSACFHGGLVDEGCAYFGQMTSKFDLHPQLKHYSCMVDLLGRAGLLKEALDFIESMPMVADAGVWGALFFACKIHGNIPIAE RAALKLLELDPNDSGNYVLLATIYREANMFEEGNNVMKIMQERRVEKIPGSSSIEVGGIFYEFIVRDRSHTKTEQIYECLAQLFKQQGNRLSSRSHRNLK WTVIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Lus10002553 [exp]	0	1
AT3G06530			ARM repeat superfamily protein...		Lus10008676 [exp]	12.3	0.8889
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Lus10002552 [exp]	13.4	0.8705
AT3G11964			RNA binding;RNA binding (.1)		Lus10029327 [exp]	14.8	0.8828
AT5G40520			unknown protein		Lus10027029 [exp]	18.1	0.8648
AT3G55160			unknown protein		Lus10015366 [exp]	23.7	0.8709
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10004570 [exp]	24.7	0.8683
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	28.6	0.8657
AT4G30150			unknown protein		Lus10012174 [exp]	31.3	0.8647
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041555 [exp]	32.5	0.8636
AT4G30150			unknown protein		Lus10007572 [exp]	33.4	0.8619

Compare expression of checked genes

Lus10002553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.