Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63530 121 / 1e-34 BB2, BB BIG BROTHER, RING/U-box superfamily protein (.1.2) AT5G52140 92 / 4e-23 RING/U-box superfamily protein (.1) AT3G19910 88 / 5e-21 RING/U-box superfamily protein (.1) AT3G15070 75 / 3e-16 RING/U-box superfamily protein (.1.2) AT3G47180 72 / 5e-16 RING/U-box superfamily protein (.1) AT5G10650 69 / 5e-14 RING/U-box superfamily protein (.1.2) AT1G53190 67 / 2e-13 RING/U-box superfamily protein (.1.2) AT4G34040 66 / 8e-13 RING/U-box superfamily protein (.1) AT5G24870 64 / 3e-12 RING/U-box superfamily protein (.1.2) AT5G67120 62 / 6e-12 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031275 [exp] 168 / 6e-53 AT3G63530 174 / 4e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10031842 [exp] 145 / 7e-44 AT3G63530 160 / 1e-48 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10019703 [exp] 117 / 5e-33 AT3G63530 285 / 1e-97 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10016416 [exp] 116 / 2e-32 AT3G63530 287 / 2e-98 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10017385 [exp] 86 / 4e-20 AT3G19910 297 / 4e-99 RING/U-box superfamily protein (.1) Lus10010182 [exp] 83 / 4e-19 AT3G19910 298 / 2e-99 RING/U-box superfamily protein (.1) Lus10029693 [exp] 70 / 1e-14 AT3G19910 105 / 1e-26 RING/U-box superfamily protein (.1) Lus10010372 [exp] 62 / 1e-11 AT5G42940 353 / 2e-112 RING/U-box superfamily protein (.1) Lus10023507 [exp] 61 / 4e-11 AT2G37150 138 / 4e-35 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G204500 [exp] 152 / 1e-46 AT3G63530 175 / 2e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.001G019600 [exp] 149 / 3e-45 AT3G63530 176 / 1e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.001G267700 [exp] 115 / 4e-32 AT3G63530 301 / 4e-104 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.009G062100 [exp] 114 / 9e-32 AT3G63530 269 / 4e-91 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.005G090800 [exp] 88 / 3e-21 AT3G19910 187 / 5e-57 RING/U-box superfamily protein (.1) Potri.002G080900 [exp] 86 / 6e-21 AT3G47180 117 / 7e-33 RING/U-box superfamily protein (.1) Potri.012G136400 [exp] 85 / 9e-21 AT5G52140 113 / 1e-30 RING/U-box superfamily protein (.1) Potri.007G073200 [exp] 86 / 3e-20 AT3G19910 303 / 3e-102 RING/U-box superfamily protein (.1) Potri.005G180300 [exp] 82 / 1e-19 AT3G47180 117 / 1e-32 RING/U-box superfamily protein (.1) Potri.015G138700 [exp] 73 / 8e-17 AT5G52140 72 / 6e-16 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10002554 pacid=23165491 polypeptide=Lus10002554 locus=Lus10002554.g ID=Lus10002554.BGIv1.0 annot-version=v1.0 ATGGATGTTCACTATATGGAGACCAGTTATCCGTATAATTCGGCCGGAAGCTTCATGGAATATTTTCAAGGTCTCACTTATGAACACGTCAACTTCATTT TTGACGGTGGTTGCCATGTTCAGGTACACCTTGCCGATCCATTTCTGGTCAGAAATTCAAAGAATTCACGTAGCTGTTTCAGGTTGTCAGGTATTGTGTG CATCCAGGAACTGCTTGAACTAGGCGAGGCCGTTGGAAGTCAGAGCCGTGGACTCTCTCAAGAACACATCTCCCTGCTTCCAGTCTCAAGATACCAATGT TGCATCTTCTCAAGGAAAAAATCAAGAACAGAAAGCAACAGGTGCGTAATATGCCAAATGGGGTATAAACGCGGCGACAAGCGAATGACATTACCATGTA AGCACATCTACCATGCCAGTTGTGGCTCAAAATGGCTCAGCATCAACAAGGCATGCCCCATATGCTACACTGAGGTATTGATTGGCTCAGCAAGCATCAA CAAATAA
AA sequence Show only first row Show all	>Lus10002554 pacid=23165491 polypeptide=Lus10002554 locus=Lus10002554.g ID=Lus10002554.BGIv1.0 annot-version=v1.0 MDVHYMETSYPYNSAGSFMEYFQGLTYEHVNFIFDGGCHVQVHLADPFLVRNSKNSRSCFRLSGIVCIQELLELGEAVGSQSRGLSQEHISLLPVSRYQC CIFSRKKSRTESNRCVICQMGYKRGDKRMTLPCKHIYHASCGSKWLSINKACPICYTEVLIGSASINK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10002554 [exp]	0	1
AT5G12380		ANNAT8	annexin 8 (.1)		Lus10019780 [exp]	10.0	0.8718
AT1G50650			Stigma-specific Stig1 family p...		Lus10006512 [exp]	13.9	0.8495
AT4G28890			RING/U-box superfamily protein...		Lus10011702 [exp]	16.1	0.8574
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10026515 [exp]	17.7	0.8421
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10040863 [exp]	19.1	0.8444
					Lus10031802 [exp]	20.3	0.7392
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10026252 [exp]	21.2	0.8224
AT2G20030			RING/U-box superfamily protein...		Lus10009511 [exp]	21.4	0.8473
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10009138 [exp]	23.2	0.8333
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10007796 [exp]	33.7	0.8350

Compare expression of checked genes

Lus10002554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.