Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027376 [exp] 46 / 3e-05 ND 48 / 6e-06
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002555 pacid=23165500 polypeptide=Lus10002555 locus=Lus10002555.g ID=Lus10002555.BGIv1.0 annot-version=v1.0 ATGAGACACAGCAACAAGGAGTTGCTTTCTGCTTTGCCGTTTTGTCTAATTGTAGTCTTAACCACAATTACCAATGTGTCTGCCGCTGATACTTACAAGC CCTATGTCTATGCTTCTCCACCACCACCTCCCTATCACTACTCATCACCTCCTCCTCCCGTCAAGTCTCCTCCACCACCCTATCACTACTCATCACCTCC TCCTCCCGTGAAATCTCCACCACCTCCATACCACTACTCGTCGCTTCCTCCTCCTAAAAAGTCTCCGCCACCTCCATACCATTACACTTCTCCTCCTCCT CCTAAGAAGTCTCCACCGCCTCCATACCATTACTCGTCGCCGCCTCCTCCTAAGAAATCCCCGCCACCTTCATACCATTACAGTTCTCCTCCTCCTCCTC CTAAGAAATCTCCACCACCACCATACCATTATAGTTCTCCTCCCCCTCCAGTGAAATCTCCACCGCCTCCATACCATTACTCGTCACCACCTCCTCCTAA GAAGTCTCATCCGCCACCATATCATTACTCGTCTCCTCCCCCTCCAGTGAAATCTCCACTGCCTCCATATCACTACTCATCGCCTCCTCCTCCTCCTAAA AAGTCTCCACCGCCTCCATACCATTACTCTTCAACTCCTCCTCCCAAGAAATCTCCTCCACCATCATACCACTACTCGTCGCCTCCTCCTCCAGTGAAAT CTCCCCCACTTCTATACCATTACTCTTCCCCTCCGCCTCCCAAGAAGTCCCCCCCACCACCATACCACTACTCCTCACCTCCTCCTCCGGTAAAGTCTCC ACCGCCTCCATACCACTACTCGTCACCTCCATCACCCAAGAAGTCCCCCCCACCACCATACCACTACTCATCGCCTCCTCCTCCGGTTAAGTCTCCCCCA CCACCGTACCACTACTCATCACCACCTCCTCCCAAGAGGTCTCCTCCGCCACCGTATCACTACTCGTCACCACCTCCTCTCAAAAAGTCTCATCCGCCAC CATACCATTACACATCACCTCCACCACCTAAGAAGTCACCACCTCCTCCATACTACTATACATCACCCCCACCTCCATCACACTATTAA
AA sequence Show only first row Show all	>Lus10002555 pacid=23165500 polypeptide=Lus10002555 locus=Lus10002555.g ID=Lus10002555.BGIv1.0 annot-version=v1.0 MRHSNKELLSALPFCLIVVLTTITNVSAADTYKPYVYASPPPPPYHYSSPPPPVKSPPPPYHYSSPPPPVKSPPPPYHYSSLPPPKKSPPPPYHYTSPPP PKKSPPPPYHYSSPPPPKKSPPPSYHYSSPPPPPKKSPPPPYHYSSPPPPVKSPPPPYHYSSPPPPKKSHPPPYHYSSPPPPVKSPLPPYHYSSPPPPPK KSPPPPYHYSSTPPPKKSPPPSYHYSSPPPPVKSPPLLYHYSSPPPPKKSPPPPYHYSSPPPPVKSPPPPYHYSSPPSPKKSPPPPYHYSSPPPPVKSPP PPYHYSSPPPPKRSPPPPYHYSSPPPLKKSHPPPYHYTSPPPPKKSPPPPYYYTSPPPPSHY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002555 [exp]	0	1
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10025493 [exp]	1.4	0.9796
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10037205 [exp]	2.0	0.9846
					Lus10018894 [exp]	2.4	0.9796
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10035593 [exp]	2.6	0.9736
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10012946 [exp]	4.0	0.9774
AT1G66880			Protein kinase superfamily pro...		Lus10028494 [exp]	5.0	0.9769
AT5G24600			Protein of unknown function, D...		Lus10013947 [exp]	7.4	0.9713
AT5G59350			unknown protein		Lus10004955 [exp]	8.1	0.9748
AT2G26230			uricase / urate oxidase / nodu...		Lus10028868 [exp]	8.7	0.9652
					Lus10018893 [exp]	11.4	0.9637

Compare expression of checked genes

Lus10002555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.