Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51260 451 / 4e-158 LPAT3 lysophosphatidyl acyltransferase 3 (.1) AT3G57650 439 / 3e-153 LPAT2 lysophosphatidyl acyltransferase 2 (.1) AT3G18850 137 / 9e-37 LPAT5 lysophosphatidyl acyltransferase 5 (.1.2.3.4.5) AT1G75020 124 / 2e-31 LPAT4 lysophosphatidyl acyltransferase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027375 [exp] 667 / 0 AT1G51260 495 / 1e-175 lysophosphatidyl acyltransferase 3 (.1) Lus10026312 [exp] 442 / 2e-154 AT3G57650 615 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10042356 [exp] 435 / 1e-151 AT3G57650 611 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10040492 [exp] 430 / 5e-150 AT3G57650 610 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10011298 [exp] 430 / 7e-150 AT3G57650 609 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10018803 [exp] 148 / 3e-40 AT1G75020 531 / 0.0 lysophosphatidyl acyltransferase 4 (.1.2) Lus10032727 [exp] 147 / 3e-40 AT1G75020 530 / 0.0 lysophosphatidyl acyltransferase 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G259200 [exp] 488 / 9e-173 AT1G51260 521 / 0.0 lysophosphatidyl acyltransferase 3 (.1) Potri.016G053000 [exp] 445 / 5e-155 AT3G57650 606 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Potri.006G055000 [exp] 441 / 3e-154 AT3G57650 587 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Potri.009G054500 [exp] 303 / 3e-100 AT3G57650 374 / 2e-128 lysophosphatidyl acyltransferase 2 (.1) Potri.002G133100 [exp] 140 / 1e-37 AT1G75020 536 / 0.0 lysophosphatidyl acyltransferase 4 (.1.2) Potri.009G112307 [exp] 139 / 2e-37 AT3G18850 493 / 1e-175 lysophosphatidyl acyltransferase 5 (.1.2.3.4.5) Potri.T125204 [exp] 139 / 3e-37 AT3G18850 493 / 9e-176 lysophosphatidyl acyltransferase 5 (.1.2.3.4.5) Potri.014G040600 [exp] 135 / 8e-36 AT1G75020 485 / 3e-172 lysophosphatidyl acyltransferase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10002556 pacid=23165495 polypeptide=Lus10002556 locus=Lus10002556.g ID=Lus10002556.BGIv1.0 annot-version=v1.0 ATGGGGTTTCCAGCCGCAATTGCCATTGTCCCGATTGGAATCGTCTTCTTCATCTCTGGCCTCGTCGTCAATCTCATTCAGGCACTAGTGTTTATGCTTT TGCGTCCATTCTCGAAGAGTTTGTACAGAAGGGTTAACAAAGTGGTGGCTGAATTGCTCTGGTTGGAACTCATCTGGCTCTTTGACTGGTGGGCAAATTT GAAGGTTGAAGTGTTTGCAGATGATGAGACCTTTAATTCACTTGGTAAAGAGCATGCATTGGTCATCTGCAATCACAGGAGTGATGTTGACTGGCTTGTT GGATGGGTCCTTGCTCAGAGATCCGGTTGCCTCGGTAGTGCACTAGCAGTCATGAAGAGAGAAGCAAAGTGGCTTCCTATAATAGGCTGGTCAATGTGGT TTTCGGATTATGTGTTTCTGGCTAGAAGCTGGGCCAAAGATGAAAACACATTGAAGGTAATGACTACTATCGAGATTGATACGAGAATTAAGTCCTTTCT TTCGTGCGCGTTATCGATGCCATCCACTCATTTCTTATGGGATTCAGCACTCCAGTCGGGTCTCGAAAGGCTGGTAGACTTTCCCATGCCCTTTTGGTTA GCTCTTTTTGCAGAAGGAACTCGCTTCACTCAGGCTAAGCTAGAAGCAGCTCAGGAGTTTGCGGCTTCAAGGGGCTTACCCATTCCTAGAAACGTTCTGC TTCCTCGTACCAAGGGTTTTGTATCGGCTGTAACTCATTTGCGAGCATTTGTGCCAGCAATCTATGACTGCACGGTGGCTGTTCCAAGAGATCAGCCCTC ACCGACACTGTTAAGAATGTTCAGAAGGCAAGCTTCAGTGATAAATGTGCAAATCAAGCGACACTCAATGGACGAACTTCCAGAAACAGCGGACAGTATC GCACAATGGTGCAAAGAAATATTCGTCACAAAGGATGCCGTGCTGGACAGGTTTCTTACCAAGGACACATTCAGCAATCCTAAACGAGACATAGGGAGAC CCAAGAAGCCACTATGCGTTTTTATTGCTTGGTCAACATTGCTTGTGTGGGGCATTGCCAGCTTGTTCCGGTGGCTATCACACCTAGGATCGTGGGAAGT CATCGCTTTTGTGGTTACTGTGCTCGTAATCGTCACAATTGGGATGCAGATTCTCATTCAATCGTCGGAGTCCGGACACTCTTCCTCTACTACTACTGCG CCTTCAGAAGGTGTAACAGTTGTCACTGATGATGGGGTTCAGGATAGACTCATTCATAAATGA
AA sequence Show only first row Show all	>Lus10002556 pacid=23165495 polypeptide=Lus10002556 locus=Lus10002556.g ID=Lus10002556.BGIv1.0 annot-version=v1.0 MGFPAAIAIVPIGIVFFISGLVVNLIQALVFMLLRPFSKSLYRRVNKVVAELLWLELIWLFDWWANLKVEVFADDETFNSLGKEHALVICNHRSDVDWLV GWVLAQRSGCLGSALAVMKREAKWLPIIGWSMWFSDYVFLARSWAKDENTLKVMTTIEIDTRIKSFLSCALSMPSTHFLWDSALQSGLERLVDFPMPFWL ALFAEGTRFTQAKLEAAQEFAASRGLPIPRNVLLPRTKGFVSAVTHLRAFVPAIYDCTVAVPRDQPSPTLLRMFRRQASVINVQIKRHSMDELPETADSI AQWCKEIFVTKDAVLDRFLTKDTFSNPKRDIGRPKKPLCVFIAWSTLLVWGIASLFRWLSHLGSWEVIAFVVTVLVIVTIGMQILIQSSESGHSSSTTTA PSEGVTVVTDDGVQDRLIHK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Lus10002556 [exp]	0	1
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Lus10027375 [exp]	6.8	0.8093
AT1G43900			Protein phosphatase 2C family ...		Lus10029745 [exp]	7.7	0.7658
AT5G51180			alpha/beta-Hydrolases superfam...		Lus10032496 [exp]	7.9	0.7207
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10039619 [exp]	10.3	0.7873
AT1G19270		DA1	DA1 (.1)		Lus10032736 [exp]	16.2	0.7497
					Lus10005948 [exp]	18.3	0.7314
AT1G71190		TTN4, SAG18	senescence associated gene 18 ...		Lus10001354 [exp]	22.0	0.7469
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10022524 [exp]	25.3	0.7557
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Lus10042975 [exp]	26.8	0.6932
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000716 [exp]	26.8	0.7343

Compare expression of checked genes

Lus10002556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.