Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12080 860 / 0 EMB2738 embryo defective 2738, GTP-binding family protein (.1.2) AT4G36250 543 / 0 ALDH3F1 aldehyde dehydrogenase 3F1 (.1) AT1G44170 458 / 3e-150 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) AT4G34240 424 / 2e-136 ALDH3I1 aldehyde dehydrogenase 3I1 (.1.2) AT5G39960 197 / 3e-53 GTP binding;GTP binding (.1) AT3G66658 154 / 4e-39 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT1G79440 142 / 2e-35 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT1G74920 122 / 8e-29 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48170 120 / 4e-28 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G23800 110 / 8e-25 ALDH2B7 aldehyde dehydrogenase 2B7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027371 [exp] 1107 / 0 AT3G12080 874 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10031280 [exp] 771 / 0 AT4G36250 555 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10031849 [exp] 771 / 0 AT4G36250 550 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10027372 [exp] 585 / 0 AT4G36250 351 / 4e-118 aldehyde dehydrogenase 3F1 (.1) Lus10041806 [exp] 503 / 3e-167 AT4G36250 640 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10028357 [exp] 499 / 7e-166 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10029684 [exp] 454 / 2e-148 AT1G44170 742 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10018153 [exp] 432 / 4e-140 AT1G44170 734 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10025681 [exp] 431 / 2e-139 AT1G44170 743 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G054200 [exp] 887 / 0 AT3G12080 813 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Potri.001G259100 [exp] 749 / 0 AT4G36250 556 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.007G017100 [exp] 552 / 0 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.005G179300 [exp] 452 / 7e-148 AT1G44170 736 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.002G081800 [exp] 449 / 5e-147 AT1G44170 731 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.001G412900 [exp] 443 / 1e-143 AT4G34240 678 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.005G069800 [exp] 439 / 5e-142 AT4G34240 626 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.004G230600 [exp] 208 / 1e-56 AT5G39960 787 / 0.0 GTP binding;GTP binding (.1) Potri.008G106000 [exp] 152 / 4e-38 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.012G075600 [exp] 129 / 3e-31 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10002557 pacid=23165496 polypeptide=Lus10002557 locus=Lus10002557.g ID=Lus10002557.BGIv1.0 annot-version=v1.0 ATGTCAACCGCCATTGCTACGGCAACCTTATTCTCTGTTAAACCCACCTCCATTTCCTCACAATTCAGCAAGCTTTCCCTTCCCTTTACCTCCCTTTCAT TTCTCCCAACCGCCTCATCCACTAAAGCATGCTTCTTTTGTCCTCCCCCATTCCTATCCACTTCTATCTCCAGCAAATCCTCCCTGGACACGGACCAAGA AGAAGAAGAAGAACTTGAGCTGGAGGTGGAATTTGGAGATGAGTTCGACGATGAGATTGAGGAGATTGACTTCGATGAGCTTGAACATGAGGCCAAAGTT GCAGTTAGGGAATACTCGTCTTCTTTGTCCAAGGAATTGACAATCGATGATGAGACTGATACGAAGAAGGATTCCAGGAAGCAGAGGAGGAAGAAACTCA CTGTTAAAGAGATTCCAGATCATCTTCTTCCAAGGGTTGCAATTGTTGGAAGGCCAAATGTTGGGAAATCAGCATTGTTTAACCGCCTTGTTGGGGAGAA CAAGGCTATAGTGGTGGATGAGCCTGGGGTTACTCGTGATCGCCTGTACGGTAGATCGTTTTGGGGTGATCATGAATTCATGGTGGTCGATACCGGAGGT GTCATCACTTTGTCGAAATCTAACGTTGAAGTTATGGAGGAGCTCGCTGTAACAACGACCATTGGCATGGAAGGGATCCCTCTCGCCACTAGGGAAGCTG CCATTGCTAGGATGCCCTCTATGATTGAGAGGCAAGCCACTGCAGCTGTGGAAGAAGCTTCTGCCATCATATTCCTCGTCGATGGACAGGCAGGTTTAAC AGCCGCTGATGTGGAGATAGCTGACTGGCTACGTAAGTATTACTCGCACAAGTTCGTCATCCTCGCAGTGAATAAGTGTGAATCTCCCCGTAAAGGACTG ATGCAAGTTTCAGACTTTTGGACATTGGGATTCTCGCCGATCCCTATATCTGCTATATCTGGAACTGGAACTGGGGAGCTTCTTAACCTTGTATGTTCAG AAATAGCTAAACCAAAGGCTTCAGAAGATCCACATGAAGAAGAAGAGAAAGAAGATTATGTACCTTCAATATCGATCGTTGGTCGGCCAAATGTTGGCAA AAGCAGCATCCTAAATGCACTGGTTGGAGAGGATAGAACAATAGTCAGCCCTGTCAGTGGCACCACTCGTGATGCTATTGATACTGAATTTACAGGACCA GATGGCCAGAAGTTCCGGCTAATTGATACTGCTGGAATCAGGAAAAGGGCTGCAGTAGCTTCTGCAGGTAGCACAACCGAGGCTTTATCCGTGAATCGTG CATTTCGAGCGATTCGACGTTCTGATGTGGTTGCTCTCGTGATTGAGGCTATGGCATGCATCACGGAACAGGATTTCAAAATTGCTGAAAGAATAGAGAA GGAAGGGAAAGGGTGCCTGATTGTTGTGAACAAGTGGGACACAATACCAAACAAAAACCAGCAGACTGCATTGCACTATGAAGAAGATGTAAGAGAGAAG CTTCGCCTTCTTCAATGGGCTCCCATCGTTTATGCCACTGCAATTTCCGGTCACAGTGTCGACAGGGTCATTGTTGCTGCCAGTGAAGTCGAAAAGGAGC GGTCCAGGAGGCTTAGTACTGCGACATTGAATCAAGTGGTACAAGAAGGTCTAGCCTTTAAGTCGCCTCCTAGGACAAGAGGTGGCAAGAGAGGCCGAGT CTACTACTGTACTCAGGCTGCAATCAGGCCACCTACGTTTGTGTTCTTTGTAAATGACTCAAACCTCTTCCCTGAGACGTACCGAAGGTACATGGAGAAG CAACTCCGTGCCAATGCAGGATTTCCTGGAACTCCAATACGGTTACTGTGGCGCAGCAGAAAGAAATCGGGAAGACCGGAAGCTGTTTCATTCATGGAGA GTGATTTGAAAAGGTTGGAGAGCGAGTTGGAAGGGATGAGAGATTACTTCAGAAGTGGGAAGACGAAAGATGGAGAATGGAGGAAGGTGCAGCTTAAAGG GTTGCTTTCTTTCCTCAAGGAAAAGGAGACAGAGATCTTTCAGGCATTGATGGAAGACTTGGGGAAGCCTGACGTTGAAGCTTATAGAGATGAGGTAGGG ACATTGGTCAAGTCTGTGAATTTTGCTTTGAAAGGGTTGAAGGAGTGGATGTCAAGTAAGAAGGCTAAGCTGCCAAAAGTTGCTCTACTGACTTCTGGAG AGGTGGTACCGGAGCCGCTTGGCCTTGTCCTTATTATTTCATCTTGGAACTTCCCCTTTGGAGTGTCATTGGAACCATTGATTGGTGCAATAGCAGCAGG AAACACAATGGTTTTAAAGCCTTCTGAACTTGCTCCTGCATCCTCTTCTCTTCTGGCCAATGTCCTCCCAACTTACTTGGACACCAAGGCAATCATGATC ATCCAAGGTGGACCTTCTATTGGTGAAAGACTCCTTCAGCAGAAGTGGGACAAAATCTTCTTCACCGGGAGTGCAAGAGTAGGAAGGTTAGTTATGTCAG CAGCTGTGGAACATCTAATACCAGTTGTTCTTGAGTTGGGAGGCAAGTGTCCTTCACTGCTTGATTCCCTAGCTTCATGGGAAATGAAGGTGGCTGTGAA TCGAATAGTTGTGTCGAAGTTCGGTGCTTGTGGGGGTCAAGCCTGCATAGCAGTTGATTATGTTCTAGTGGAGAAGAGTTTAGTTCCCAAATTGGTAGAG TTGATGAAGGTGTCCATCAAGAAAATGTTTGGAGAAAACCCTAGAGACTCCAATTCCTTGACAAAAATAATCAACAGGCAACACTTCTCAAGATTGAACA ATCTTCTCAGTGATCCGGCAGTCAAAGCTTCTGTTGTCTATGGCGGATCCATGGACGAAGAACATCTATACATTGAGCCAACTATACTGGTGGATCCACC ACTCAACTCTGCAATCATGACAGAGGAAGTTTTCGGCCCTTTGCTTCCAATAATCACATTGGAGAAGATTGAAGACAGCATTAACTTCATAAACACAAGG CCAAAGCCACTAGCTTTATATGCATTCACCAAGAACAAGTCATTGAGCAAAAGGCTTCTCTCTGAAACGTCGTCAGGAAGCATAGTTTTCAATGATGCAA TCTTACAATATGCAGCAGATACCTTGCCATTTGGAGGGATAGGGGAGAGTGGGATGGGGAAGTACCATGGGAAGTACTCGTTTGAGACATTCAGCCATTA CAAAGCCATAGTGAGGAGAAGCTATCTGTCAGATTTTTGGTACAGATTTCCTCCATGGAACCTTAACAAGCTGCTGCTGTTTGAAGCAACTTACCACTTC GATTATCTGTGGTTGCTTATGGTCATTCTTGGCCTCAAGAGGTCTAGATAA
AA sequence Show only first row Show all	>Lus10002557 pacid=23165496 polypeptide=Lus10002557 locus=Lus10002557.g ID=Lus10002557.BGIv1.0 annot-version=v1.0 MSTAIATATLFSVKPTSISSQFSKLSLPFTSLSFLPTASSTKACFFCPPPFLSTSISSKSSLDTDQEEEEELELEVEFGDEFDDEIEEIDFDELEHEAKV AVREYSSSLSKELTIDDETDTKKDSRKQRRKKLTVKEIPDHLLPRVAIVGRPNVGKSALFNRLVGENKAIVVDEPGVTRDRLYGRSFWGDHEFMVVDTGG VITLSKSNVEVMEELAVTTTIGMEGIPLATREAAIARMPSMIERQATAAVEEASAIIFLVDGQAGLTAADVEIADWLRKYYSHKFVILAVNKCESPRKGL MQVSDFWTLGFSPIPISAISGTGTGELLNLVCSEIAKPKASEDPHEEEEKEDYVPSISIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTGP DGQKFRLIDTAGIRKRAAVASAGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDFKIAERIEKEGKGCLIVVNKWDTIPNKNQQTALHYEEDVREK LRLLQWAPIVYATAISGHSVDRVIVAASEVEKERSRRLSTATLNQVVQEGLAFKSPPRTRGGKRGRVYYCTQAAIRPPTFVFFVNDSNLFPETYRRYMEK QLRANAGFPGTPIRLLWRSRKKSGRPEAVSFMESDLKRLESELEGMRDYFRSGKTKDGEWRKVQLKGLLSFLKEKETEIFQALMEDLGKPDVEAYRDEVG TLVKSVNFALKGLKEWMSSKKAKLPKVALLTSGEVVPEPLGLVLIISSWNFPFGVSLEPLIGAIAAGNTMVLKPSELAPASSSLLANVLPTYLDTKAIMI IQGGPSIGERLLQQKWDKIFFTGSARVGRLVMSAAVEHLIPVVLELGGKCPSLLDSLASWEMKVAVNRIVVSKFGACGGQACIAVDYVLVEKSLVPKLVE LMKVSIKKMFGENPRDSNSLTKIINRQHFSRLNNLLSDPAVKASVVYGGSMDEEHLYIEPTILVDPPLNSAIMTEEVFGPLLPIITLEKIEDSINFINTR PKPLALYAFTKNKSLSKRLLSETSSGSIVFNDAILQYAADTLPFGGIGESGMGKYHGKYSFETFSHYKAIVRRSYLSDFWYRFPPWNLNKLLLFEATYHF DYLWLLMVILGLKRSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10002557 [exp]	0	1
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10032840 [exp]	1.0	0.9641
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023626 [exp]	1.4	0.9584
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10040644 [exp]	3.0	0.9349
AT4G04750			Major facilitator superfamily ...		Lus10033795 [exp]	3.5	0.9293
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10028357 [exp]	4.0	0.9038
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10011358 [exp]	4.5	0.9156
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10040156 [exp]	5.5	0.8823
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009961 [exp]	5.9	0.9121
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10018268 [exp]	6.5	0.9151
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10041806 [exp]	8.1	0.8975

Compare expression of checked genes

Lus10002557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.