Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12860 713 / 0 DIT1 dicarboxylate transporter 1 (.1.2) AT5G64290 404 / 6e-135 DCT, DIT2.1 dicarboxylate transport 2.1 (.1) AT5G64280 353 / 1e-115 DIT2.2 dicarboxylate transporter 2.2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027368 [exp] 857 / 0 AT5G12860 838 / 0.0 dicarboxylate transporter 1 (.1.2) Lus10003967 [exp] 401 / 9e-134 AT5G64290 842 / 0.0 dicarboxylate transport 2.1 (.1) Lus10023779 [exp] 180 / 3e-52 AT5G64290 326 / 1e-108 dicarboxylate transport 2.1 (.1) Lus10023778 [exp] 127 / 1e-34 AT5G64290 256 / 7e-84 dicarboxylate transport 2.1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G258600 [exp] 737 / 0 AT5G12860 777 / 0.0 dicarboxylate transporter 1 (.1.2) Potri.009G053800 [exp] 730 / 0 AT5G12860 801 / 0.0 dicarboxylate transporter 1 (.1.2) Potri.017G050500 [exp] 384 / 3e-127 AT5G64290 707 / 0.0 dicarboxylate transport 2.1 (.1) Potri.001G310600 [exp] 353 / 3e-115 AT5G64290 652 / 0.0 dicarboxylate transport 2.1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [flax] [poplar] IT PF00939 [flax] [poplar] Na_sulph_symp Sodium:sulfate symporter transmembrane region
Representative CDS sequence Show only first row Show all	>Lus10002560 pacid=23165487 polypeptide=Lus10002560 locus=Lus10002560.g ID=Lus10002560.BGIv1.0 annot-version=v1.0 ATGGCGTCCCTCGCCTTCACCTCCTCGTGCTCCGCATTCAACTCCCTCCCTTCGCTCAAATCCCACCGCTCTCTTTCCTTCTCCTCCCCTTTCAGATCCA CCGCAGCCGCTACCAGACTCTCCTCCTCGTCCACCTCCTCTGCCGCCGGATTCTGTCTCCGTCCACTCCTCAAACATGATAACCACCGCACTTTCAAAAT CCGAGCATCTGCCGACTCTTCTCCGCCCGCCGCCGTTGCTCCCCCTCCACCACCGCCGCAGCCATGGCAGGGGGCGGCGATGAAGCCGCTCATAGCCTCG ATTGCGATTGGAGTCGCGATCTGGAACGTCCCAGTCCCTGCTGGAGTCACCAAGCAAGCATGGCAGCTACTCGCGATCTTTCTCGCAACGATCGTCGGAA TCATCACCCAACCTCTCCCCTTAGGAGCTGTAGCATTAATGGGATTAGGAGCTTCCGTACTAACCAAAACCCTTCCTTTCGCCGCCGCATTCTCCGCCTT CGGCGACCCGATCCCTTGGCTTATCGCGCTAGCCTTCTTCTTCGCCCGGGGATTCATCAAGACCGGGTTAGGTAACCGGATCGCTTACCAGTTCGTATCT CTGTTTGGATCCTCTTCCCTAGGGTTAGGTTACAGTTTGGTCTTCAGCGAGGCCTTGCTTGCTCCGGCTATCCCGTCCGTCTCGGCTCGAGCTGGAGGAA TATTCTTGCCCCTAGTGAAATCTCTCTGCGTCGCCTGTGGCAGCAACGCCGGAGACGGCACGGAACACAAGCTCGGGTCTTGGCTGATGTTGACTTGCTT CCAGACGTCTTGTATATCGTCGGCAATGTTCTTGACTGCCATGGCGGCGAATCCTCTGAGTGTCAACTTGACGATGAACACTATAAACCAGACGTTTGGG TGGACTGATTGGGCAATGGCTGCCTTTGTGCCTGGATTGGTTTCGTTGCTCGTTGTTCCTCTGATTCTGTACATTATCTATCCGCCATCGGTGAAGAGCA GCCCCGATGCTCCTAAATTGGCTAAGGAGAAGCTCGCCAACATGGGTCCGATGACCAAGAATGAAATCATCATGGCCGGAACTCTGCTTCTTACGGTTGG GCTCTGGATTTTTGGAGGGATGTTGAATGTTGATGCAGTCACTGCCGCCATTCTTGGGTTGTCCATCCTCCTTGTCTCTGGTGTAGTGACATGGAAAGAA TGCTTAGCTGAATCGGTTGCTTGGGATACACTTACATGGTTTGCAGCCCTTATCGCCATGGCAGGGTACCTCAACAAGTACGGTCTCATCTCCTGGTTCA GTGAAACCGTTGTCAAGGTTGTAGGTGGACTAGGCCTATCATGGCAGGCATCATTCGGGATCTTGGTCCTCCTCTACTTCTACTCCCACTACTTCTTCGC CAGTGGGGCGGCCCACATTGGAGCTATGTTCACAGCATTCTTGTCCGTGGCCAGTGCACTAGGGACACCACCTTACATCGGAGCTCTGGTGTTGTCTTTC CTCTCCAACTTAATGGGAGGTCTCACACACTACGGGATAGGTTCTGCTCCGGTATTCTACGGTGCTGGCTATGTCCCTCTGGCGAAATGGTGGGGCTATG GATTCGTTATCTCGATTGTCAACCTCGCAATCTGGCTGGGAATTGGTGGCTTCTGGTGGAAATTCCTTGGCCTGTGGTAA
AA sequence Show only first row Show all	>Lus10002560 pacid=23165487 polypeptide=Lus10002560 locus=Lus10002560.g ID=Lus10002560.BGIv1.0 annot-version=v1.0 MASLAFTSSCSAFNSLPSLKSHRSLSFSSPFRSTAAATRLSSSSTSSAAGFCLRPLLKHDNHRTFKIRASADSSPPAAVAPPPPPPQPWQGAAMKPLIAS IAIGVAIWNVPVPAGVTKQAWQLLAIFLATIVGIITQPLPLGAVALMGLGASVLTKTLPFAAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVS LFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNAGDGTEHKLGSWLMLTCFQTSCISSAMFLTAMAANPLSVNLTMNTINQTFG WTDWAMAAFVPGLVSLLVVPLILYIIYPPSVKSSPDAPKLAKEKLANMGPMTKNEIIMAGTLLLTVGLWIFGGMLNVDAVTAAILGLSILLVSGVVTWKE CLAESVAWDTLTWFAALIAMAGYLNKYGLISWFSETVVKVVGGLGLSWQASFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPYIGALVLSF LSNLMGGLTHYGIGSAPVFYGAGYVPLAKWWGYGFVISIVNLAIWLGIGGFWWKFLGLW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Lus10002560 [exp]	0	1
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Lus10027368 [exp]	1.0	0.8964
AT1G01300			Eukaryotic aspartyl protease f...		Lus10030246 [exp]	2.0	0.8952
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10023779 [exp]	3.0	0.8692
AT1G12370		UVR2, PHR1	UV RESISTANCE 2, photolyase 1 ...		Lus10024557 [exp]	6.2	0.7860
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10022445 [exp]	7.5	0.8386
AT5G19760			Mitochondrial substrate carrie...		Lus10030361 [exp]	8.7	0.8496
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10001461 [exp]	9.9	0.8333
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10021666 [exp]	10.3	0.7753
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10027486 [exp]	10.5	0.8303
AT1G32860			Glycosyl hydrolase superfamily...		Lus10033244 [exp]	11.7	0.8373

Compare expression of checked genes

Lus10002560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.