Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51350 645 / 0 ARM repeat superfamily protein (.1) AT1G09270 49 / 6e-06 IMPA-4 importin alpha isoform 4 (.1.2.3) AT4G02150 44 / 0.0004 IMPA-3, MOS6, ATIMPALPHA3 MODIFIER OF SNC1, 6, IMPORTIN ALPHA ISOFORM 3, IMPORTIN ALPHA 3, ARM repeat superfamily protein (.1) AT1G02690 43 / 0.0006 IMPA-6 importin alpha isoform 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027364 [exp] 1228 / 0 AT1G51350 682 / 0.0 ARM repeat superfamily protein (.1) Lus10016850 [exp] 51 / 3e-06 AT4G16143 858 / 0.0 importin alpha isoform 2 (.1.2) Lus10037722 [exp] 50 / 6e-06 AT3G06720 884 / 0.0 importin alpha isoform 1 (.1.2) Lus10010028 [exp] 48 / 3e-05 AT3G06720 862 / 0.0 importin alpha isoform 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G053400 [exp] 736 / 0 AT1G51350 787 / 0.0 ARM repeat superfamily protein (.1) Potri.002G199600 [exp] 47 / 3e-05 AT3G06720 858 / 0.0 importin alpha isoform 1 (.1.2) Potri.008G214100 [exp] 46 / 0.0001 AT4G16143 881 / 0.0 importin alpha isoform 2 (.1.2) Potri.005G020400 [exp] 45 / 0.0002 AT3G06720 880 / 0.0 importin alpha isoform 1 (.1.2) Potri.013G007300 [exp] 45 / 0.0002 AT1G09270 877 / 0.0 importin alpha isoform 4 (.1.2.3) Potri.013G010900 [exp] 45 / 0.0002 AT3G06720 869 / 0.0 importin alpha isoform 1 (.1.2) Potri.010G001400 [exp] 44 / 0.0003 AT4G16143 849 / 0.0 importin alpha isoform 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10002562 pacid=23165503 polypeptide=Lus10002562 locus=Lus10002562.g ID=Lus10002562.BGIv1.0 annot-version=v1.0 ATGCCTTCTCCCGCCGCCTCCTCCTCCGTCGCCGTCGGAGATGGCGGCCTTCCTGCGATCGTCTCCCGCCTTTCCTCCGGCGACCCTGACGTCAAGCTCA AAGCTCTCCGGGAAGTCAAAAACCAGATAATTGGCAACAAGACGAAGAAGCTCAACTTCGTGAAGCTAGGAGCTGTCCCGCTCGTTGCCTCAATTCTCTC CGCCGCAATTGCCGACGGTGAGGGGTTCCAATCAGCTCCCCGCGCTTCTGTCCCTGGAATGCTTGGGTATTCAAGCAATGTCGTCGTCCAATCGGCTGCA GCTCTTGGCAGCTTTGCCTGTGGCTTCGACGACGGCGCCCAGGCCGTTCTCTCCGCAGGCGCTATGCCGCTCTTGATTAGACTGCTTTCTCATCCCGACG GAAAAGTGGTAGATGCTGGTGCTCGTTCCTTGAGAATGATCTACCAGTCTGAATTAGCTCCGAAATACGAACTCCTTGAACATAGAAACTTAGAATTCCT GGTTTCCTTATTGAATAGCGAGTGTGTAAACGTTACTGAGCTAGGTGCAAGCATTATAGCCCATTCCTGCAGGACAAACGCAGAGCAGAAAGCTTTGCTT GAAGCTGGGACCTTGAAGAGGCTGATCAGCCTTCTTGATGGGACATTAGGTCAGAAGGACGCTAGCTTAGGTTCTCTTGCCGCTGTTTTCAGAGACAATG CTGAAGTCATTACAAAGTTTCTGGGTCCTCATGGTGGGAAGCCATTGAATTCCATTACTTATTTGATACAGGATGAAGTTGGGTTCAAGATCAAGTTGGT CAATACCCTCCTTGAGCTCCTTGATGATCCAGGTCAAGTTGGAGATGAATCTCCATATGTATTTTCTAGTTTGATTGGTGGAAAGGAGGACTTGCAGAAG ATAGCTCTTGAAGCAGATGCTATCCTTAAATTACGTGATTGCATGAAAACGGATAAAGGAAATCCTAGGCGTCTTCGAGGTGTATTATTGGCGTTGGCTG ATCTTTGCTCAAAGTTAGAGAGCTGTAGATTGGCTGTCCTATCTTTTGAGGTTTTGAATCCACTTATTGGTTTCCTGGGGCATAAGGATAAAGAGATGCG AATTTCAGCTTGTGACTGTTTAAGAAATGTCACTCGTTCTATCAAGAATGCTGTTCAGAAATTGTGTGCAGGTTACTTTATGAAAAACGAAGCCCTTGTT ACTGCTTTGATTCAGCTGTTAATGGATGCTTCAGAGGAAGTCCAGGTTGCAGCTCTTGCTGTTGTCAGTAACATTGTCGTTGATTTTGCATCACATAAGT CTACATTTATTGAGCACGGAGGCTTGCAACAGATTCTCAGTTTATCAAAATCAATGATTCCGGCTGTCCGGTCGAACTCCCTGTGGGCTTTGAGGAACAT GACGTTCCTTGCAGACAATAAATGCAAAGAAGACGTTTCTTTAGGGATGACTACGTCACTGATATCGAGTCTTATATGTGACAGTGAGCCATGTGTTAAG GAGCAAGCTCTGGCCTTTGTTCGCAATCTTGTTGATGGAAGTACTGAATCAATTGAGCATGTGCTTTCTGACGATGGTATTGTTTTGGATGCTGTTGGGC GACAATTAAGGGGTTGTCTGAAAACTGAAGCTTGGATACAAGGAATGTATGTGCTCGGAAACATTGCCTGTGGAAACGAGTCTCACAAGGAAGCAGTTAT GGACCAGCTTTTCCCACTCCTGGAAAATGAAACCGGATCTTTCATTGTCAAATTCTTGGTGGATGCTGACAGCAGACTGCGCATTGCCGCTGTCTGGACC CTCATAAATCTCACCTTCCCATCTAGTACAGGAGCAGTTAATCGGCTGACGAAACTACAGAATTCTGGGGTAATGCCCCTAGTAAGGAATATGGTCAATG ATCCCTGCTTGGACGTGAAGCTTAGAGTTAGAACATTGCTCACCCAGGCTATGTGTTTCGGCGACGTTTGA
AA sequence Show only first row Show all	>Lus10002562 pacid=23165503 polypeptide=Lus10002562 locus=Lus10002562.g ID=Lus10002562.BGIv1.0 annot-version=v1.0 MPSPAASSSVAVGDGGLPAIVSRLSSGDPDVKLKALREVKNQIIGNKTKKLNFVKLGAVPLVASILSAAIADGEGFQSAPRASVPGMLGYSSNVVVQSAA ALGSFACGFDDGAQAVLSAGAMPLLIRLLSHPDGKVVDAGARSLRMIYQSELAPKYELLEHRNLEFLVSLLNSECVNVTELGASIIAHSCRTNAEQKALL EAGTLKRLISLLDGTLGQKDASLGSLAAVFRDNAEVITKFLGPHGGKPLNSITYLIQDEVGFKIKLVNTLLELLDDPGQVGDESPYVFSSLIGGKEDLQK IALEADAILKLRDCMKTDKGNPRRLRGVLLALADLCSKLESCRLAVLSFEVLNPLIGFLGHKDKEMRISACDCLRNVTRSIKNAVQKLCAGYFMKNEALV TALIQLLMDASEEVQVAALAVVSNIVVDFASHKSTFIEHGGLQQILSLSKSMIPAVRSNSLWALRNMTFLADNKCKEDVSLGMTTSLISSLICDSEPCVK EQALAFVRNLVDGSTESIEHVLSDDGIVLDAVGRQLRGCLKTEAWIQGMYVLGNIACGNESHKEAVMDQLFPLLENETGSFIVKFLVDADSRLRIAAVWT LINLTFPSSTGAVNRLTKLQNSGVMPLVRNMVNDPCLDVKLRVRTLLTQAMCFGDV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51350			ARM repeat superfamily protein...		Lus10002562 [exp]	0	1
AT1G55930			CBS domain-containing protein ...		Lus10004777 [exp]	3.9	0.8962
AT2G27460			sec23/sec24 transport family p...		Lus10020622 [exp]	7.1	0.8857
AT4G23460			Adaptin family protein (.1)		Lus10028775 [exp]	10.2	0.8795
AT1G26370		RID1	RNA helicase family protein (....		Lus10037067 [exp]	11.1	0.8831
AT3G56870			unknown protein		Lus10018851 [exp]	12.8	0.8668
AT5G45190			Cyclin family protein (.1.2)		Lus10036191 [exp]	13.2	0.8474
AT2G25970			KH domain-containing protein (...		Lus10004445 [exp]	13.3	0.8325
AT5G57990		UBP23	ubiquitin-specific protease 23...		Lus10035825 [exp]	13.6	0.8859
AT1G71440		TFCE, PFI	TUBULIN-FOLDING COFACTOR E, tu...		Lus10003518 [exp]	15.7	0.8417
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Lus10026766 [exp]	16.0	0.8617

Compare expression of checked genes

Lus10002562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.