Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47870 236 / 2e-79 RAD52-2B, RAD52-2 radiation sensitive 51-2, unknown protein AT1G71310 129 / 1e-37 RAD52-1B.2, RAD52-1B.1, RAD52-1A, RAD52-1 radiation sensitive 51-1, cobalt ion binding (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001196 [exp] 366 / 9e-131 AT5G47870 239 / 7e-81 radiation sensitive 51-2, unknown protein Lus10000280 [exp] 362 / 3e-129 AT5G47870 238 / 3e-80 radiation sensitive 51-2, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G158500 [exp] 246 / 3e-83 AT5G47870 233 / 3e-78 radiation sensitive 51-2, unknown protein Potri.001G072300 [exp] 243 / 8e-82 AT5G47870 223 / 3e-74 radiation sensitive 51-2, unknown protein Potri.019G068500 [exp] 131 / 2e-38 AT1G71310 233 / 9e-79 radiation sensitive 51-1, cobalt ion binding (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002565 pacid=23160142 polypeptide=Lus10002565 locus=Lus10002565.g ID=Lus10002565.BGIv1.0 annot-version=v1.0 ATGGCTGTGCAGTGCAATGGCAGCAGCTCTTTTGTGGCTAAATCAATGCAGGCTGCCGTATCACCTTCGCTAGCATCTTCATTCTATAAAACAACAAGAA GTAGTAATCGTAATATAGGAGGTTTACACAAGGTTCGGCTTGTGTCTGCACTTGGTGGTGGTGGCGGCGGGGGAAACAGTAGCAATGATGGTAACAAGAA GAAGGGTGTTCCTAACTCCAATTATGTGGTGCCTTTGGATAAATCTTTCTCTTCCGCACAATCTTCCTGTATAACTCGCCCACTTGCGGAGATCTTACGT GATCTGAACAAGAGGATTCCTGACAACATAAATAAGCCTTCACAACCTCCGACCTCCATTCCCTGGTACCATGCAAACCGCATGTTGAGCTTCTATGCCC CTGGATGGTGTGGAGAAATAAGGGATGTTATATTCTCAGACAATGGTGGTGTTACTGTCGTTTATCGCGTTACGATACGTGGATCTGATGGAGAGGCACA CCGTGAATCAAGTGGCACAGTATTACCTGTTGATGGCAACATTGTGGATCCCGTTGCAGCAGCAGAAGAAATAGCCTTCTGCAGAGCATGTGCTAGGTTT GGCCTTGGCTTGTATCTGTACCATGAAGAATAA
AA sequence Show only first row Show all	>Lus10002565 pacid=23160142 polypeptide=Lus10002565 locus=Lus10002565.g ID=Lus10002565.BGIv1.0 annot-version=v1.0 MAVQCNGSSSFVAKSMQAAVSPSLASSFYKTTRSSNRNIGGLHKVRLVSALGGGGGGGNSSNDGNKKKGVPNSNYVVPLDKSFSSAQSSCITRPLAEILR DLNKRIPDNINKPSQPPTSIPWYHANRMLSFYAPGWCGEIRDVIFSDNGGVTVVYRVTIRGSDGEAHRESSGTVLPVDGNIVDPVAAAEEIAFCRACARF GLGLYLYHEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10002565 [exp]	0	1
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10004139 [exp]	1.0	0.9488
AT5G10750			Protein of unknown function (D...		Lus10026242 [exp]	1.7	0.9407
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10036432 [exp]	3.2	0.9311
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Lus10013686 [exp]	3.5	0.9296
AT1G11320			unknown protein		Lus10013574 [exp]	4.0	0.9432
AT4G21580			oxidoreductase, zinc-binding d...		Lus10011233 [exp]	4.1	0.9237
AT1G25420			Regulator of Vps4 activity in ...		Lus10041442 [exp]	4.7	0.9307
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10014627 [exp]	5.3	0.9261
AT1G21770			Acyl-CoA N-acyltransferases (N...		Lus10025670 [exp]	5.5	0.9256
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10019328 [exp]	5.7	0.9328

Compare expression of checked genes

Lus10002565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.