Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47920 69 / 2e-14 unknown protein AT2G42180 48 / 6e-07 unknown protein AT3G57950 44 / 1e-05 unknown protein AT4G26130 42 / 0.0001 unknown protein AT5G13880 41 / 0.0002 unknown protein AT5G56980 41 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000281 [exp] 304 / 8e-106 AT5G47920 76 / 5e-17 unknown protein Lus10021036 [exp] 43 / 7e-05 AT3G57950 108 / 7e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G160300 [exp] 71 / 3e-15 AT5G47920 172 / 1e-54 unknown protein Potri.014G140000 [exp] 59 / 1e-10 AT5G47920 114 / 1e-31 unknown protein Potri.006G191100 [exp] 44 / 2e-05 AT5G06790 141 / 4e-42 unknown protein Potri.006G152200 [exp] 44 / 2e-05 AT5G56980 103 / 2e-25 unknown protein Potri.001G008160 [exp] 41 / 3e-05 AT2G26110 45 / 7e-07 Protein of unknown function (DUF761) (.1) Potri.003G062300 [exp] 41 / 6e-05 AT1G15385 58 / 8e-13 unknown protein Potri.016G047800 [exp] 42 / 0.0001 AT5G06790 137 / 1e-40 unknown protein Potri.001G171701 [exp] 40 / 0.0001 AT1G15385 53 / 7e-11 unknown protein Potri.001G406600 [exp] 41 / 0.0003 AT1G61260 192 / 1e-58 Protein of unknown function (DUF761) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002566 pacid=23160133 polypeptide=Lus10002566 locus=Lus10002566.g ID=Lus10002566.BGIv1.0 annot-version=v1.0 ATGACGACGTCCAAGAGTAAGAAAGCTTTAGCTATGTTGAAGCATATAATATCGTCTTTGCTGACTTCGGCTATATCTGCGGTTGCTGGGAACAAAACAA GTGAAGTACTGAAAGCTCGGGTTTCCATGACGTCATTGGTAATGGGGAGAAAGAAAAAGATGTTGCAATTGCAGCTGGCTTCCGTCTGCGACAAGATTAA TACAGCTCTTGGTGGAAGTAGCCGCAGCTGGGAGGATCACCGGGCAATAGTTGTCTACAATCCTCCTAATCTCACTGGTGCCAGACCTGGTCCTGGCTGC TGCTGCTGCTGCTGCACAAATGTTGATGATGGAGTACTGCATAACGGTACTCATTCTGATGATGATGATTACGAGGCTGCAGCAGTTCAACATAGCCTTA TGATCATTACTCCTAATTATGAGATAAATGAAGAAAAGGACCCGTGTCGTCTGTATGCTGTTGATGTCCACGATGATAAGAGCTGCATCAGTACTGATCA TTTCCGTGATCATGATCAGGAAGATGATATTGATGAGGTGGCGGACATGTTTATCATGAGATTCCATAAACAGATGCGCCTACAGAAGCTGGAGTCCTTC AAAAGGTATCAGGAGATGCTCCAGCGCAGTCTTTAA
AA sequence Show only first row Show all	>Lus10002566 pacid=23160133 polypeptide=Lus10002566 locus=Lus10002566.g ID=Lus10002566.BGIv1.0 annot-version=v1.0 MTTSKSKKALAMLKHIISSLLTSAISAVAGNKTSEVLKARVSMTSLVMGRKKKMLQLQLASVCDKINTALGGSSRSWEDHRAIVVYNPPNLTGARPGPGC CCCCCTNVDDGVLHNGTHSDDDDYEAAAVQHSLMIITPNYEINEEKDPCRLYAVDVHDDKSCISTDHFRDHDQEDDIDEVADMFIMRFHKQMRLQKLESF KRYQEMLQRSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47920			unknown protein		Lus10002566 [exp]	0	1
AT3G55050			Protein phosphatase 2C family ...		Lus10015047 [exp]	3.6	0.8385
AT3G12620			Protein phosphatase 2C family ...		Lus10003993 [exp]	7.3	0.8310
AT1G27040			Major facilitator superfamily ...		Lus10002793 [exp]	7.9	0.8380
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10034768 [exp]	8.8	0.7969
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10011565 [exp]	10.4	0.8207
AT2G38870			Serine protease inhibitor, pot...		Lus10014740 [exp]	11.4	0.8127
					Lus10015218 [exp]	13.6	0.7996
					Lus10005748 [exp]	15.0	0.7633
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10038807 [exp]	15.4	0.7206
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10040708 [exp]	17.0	0.7874

Compare expression of checked genes

Lus10002566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.