Plant FIBer expression Database

Lus10002568 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13390 551 / 0 NEF1 no exine formation 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001797
[exp]
758 / 0 AT5G13390 1545 / 0.0 no exine formation 1 (.1)
Lus10002569
[exp]
0 / 1 AT5G13390 1051 / 0.0 no exine formation 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G068900
[exp]
603 / 0 AT5G13390 1331 / 0.0 no exine formation 1 (.1)
Potri.003G161400
[exp]
553 / 0 AT5G13390 1340 / 0.0 no exine formation 1 (.1)
PFAM info
Representative CDS sequence
>Lus10002568 pacid=23160137 polypeptide=Lus10002568 locus=Lus10002568.g ID=Lus10002568.BGIv1.0 annot-version=v1.0
ATGATACCGCCGGAGCTACAGCCTCGATCCTTCCGTCCTTACACAGCTTCCTCCCTCAGTGCCCCATCTTTGTCCTCCAACGACAATGGATCTCTCTACT
CCCCTGATCGTACCGTCTCAGACACTGCCGGCGCTAGTCCTAATTCTCAATTCCCATCCTCCTCCCCTTCATCCTCAAGATCCCGATTCTCCCCTTCATC
CTTCTCTCATAACGCCAGAATAGCCGTCGCTCTGGTCCCTTGCGCCGCCTTCCTCCTAGATCTCGGCGGCGCTCCCGTCGTCGCTACCCTCACCCTTGGT
CTCATGCTTTCTTACATCCTCGATTCCCTCAACCTCAAGTCTGGTGCCTTCTTTGGGGTCTGGCTCTCTCTTATCGCTTCCCAGGTCGCATTCTTCTTTA
CCTCATCCCTCATTTCTGCTTTCAATTCTATTCCTCTCGGCCTCCTCGCCTCCTTCCTTTGTGCTCAGGCCGATTTCCTTGTCGGCGTTTGGGCCTCTCT
CCAGTTCAAGTGGATCCAGCTCGAGAACCCCAGCATCGTCCTCGCGCTCGAGCGCCTCTTGTTTGCCTGCGTTCCTTTCACTGCTTCCTCCATATTCGCT
TGGGCCACAATCTCGGCTGTCGGTATGAACAACGCCTCCTTTTATCTCATGGCTTTTAACTGCGTCTTCTACTGGCTTTTCGCTATTCCCCGCGTTTCTT
CCTTTAAGACCAAGCAGGAGATCAAGTATCATGGTGGTCAGGTCCCCGACGACAACTTCATTCTCTGCCCACTGGAGAGCTGTTTCCTTACTCTATACTT
GCTATTCTTCCCTCTCTTGTTTCATGCTGCCTCCCATTACTCTGTCATGTTTTCATCTGTTACTTCCTTCTGTGATTTGCTTCTGCTCTTCTTCATTCCT
TTCTTGCTCCTACTCTATGCCTCCACCAAGGACGCACTTCGGTGGGTCACTAAGAGTCCGCGCCAGCTTCATAGCATTCGCGTTGTCAATGGCGCCGTGG
CTTTGATCGTGGTCATAATTTCCTTGGAAGTCCGAGTTGTTTTCCATTCATTTGGGCGCTACATTCAGGTCCCACCTCCTTTGAATTATCTCCTTGTGAC
CACAACGATGCTCGGAGGAGCAGCTGGAGCTGGTGCATATGCCTTGGGCATGGTTTCTGATGCTTTCAGCTCCTTGGTTTTCACTGCTTTGGCTGTTGTT
GTCAGCTCTGCTGGAGCACTTGTTGTGGGATTTCCAATTGTGTTCCTTCCATTGCCATCAGTTACTGGCTTTTATCTGGCTCGCTTTTTTACAAAGAAGA
GCCTGCAGTCATACTTTGCTTTTGTTGTTCTTGGGAGCTTAATGGTATCTTGGTTTGTACTGCATAACTTCTGGGACCTCAATATATGGCTGGCTGGCAT
GTCTTTAAAATCTTTCTGCAAGCTGATAGTTGCTAATGCTGTGCTTGCCATGGCGGTTCCTGGTTTACATGGCGGTTCCTGGTTTAGCGCTTCTTCCTCA
GAGACTCAATTTGTTGGCTGA
AA sequence
>Lus10002568 pacid=23160137 polypeptide=Lus10002568 locus=Lus10002568.g ID=Lus10002568.BGIv1.0 annot-version=v1.0
MIPPELQPRSFRPYTASSLSAPSLSSNDNGSLYSPDRTVSDTAGASPNSQFPSSSPSSSRSRFSPSSFSHNARIAVALVPCAAFLLDLGGAPVVATLTLG
LMLSYILDSLNLKSGAFFGVWLSLIASQVAFFFTSSLISAFNSIPLGLLASFLCAQADFLVGVWASLQFKWIQLENPSIVLALERLLFACVPFTASSIFA
WATISAVGMNNASFYLMAFNCVFYWLFAIPRVSSFKTKQEIKYHGGQVPDDNFILCPLESCFLTLYLLFFPLLFHAASHYSVMFSSVTSFCDLLLLFFIP
FLLLLYASTKDALRWVTKSPRQLHSIRVVNGAVALIVVIISLEVRVVFHSFGRYIQVPPPLNYLLVTTTMLGGAAGAGAYALGMVSDAFSSLVFTALAVV
VSSAGALVVGFPIVFLPLPSVTGFYLARFFTKKSLQSYFAFVVLGSLMVSWFVLHNFWDLNIWLAGMSLKSFCKLIVANAVLAMAVPGLHGGSWFSASSS
ETQFVG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G13390 NEF1 no exine formation 1 (.1) Lus10002568
[exp]
0 1
AT5G13390 NEF1 no exine formation 1 (.1) Lus10001797
[exp]
1.0 0.9590
AT5G38880 unknown protein Lus10005085
[exp]
4.2 0.8862
AT4G34450 coatomer gamma-2 subunit, puta... Lus10026336
[exp]
5.3 0.9138
AT4G31590 ATCSLC5, ATCSLC... CELLULOSE-SYNTHASE LIKE C5, Ce... Lus10026923
[exp]
9.2 0.8771
AT1G67930 Golgi transport complex protei... Lus10020753
[exp]
9.9 0.8711
AT2G39750 S-adenosyl-L-methionine-depend... Lus10040268
[exp]
10.2 0.8850
AT3G03250 AtUGP1, UGP1, U... UDP-GLUCOSE PYROPHOSPHORYLASE ... Lus10031365
[exp]
10.8 0.8616
AT3G03050 RHD7, ATCSLD3, ... ROOT HAIR DEFECTIVE 7, KOJAK, ... Lus10009247
[exp]
14.8 0.8521
AT4G00740 QUA3 QUASIMODO 3, S-adenosyl-L-meth... Lus10000808
[exp]
16.5 0.8700
AT5G67360 ARA12 Subtilase family protein (.1) Lus10011089
[exp]
16.6 0.8665

Lus10002568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.