Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13390 931 / 0 NEF1 no exine formation 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001797 [exp] 1191 / 0 AT5G13390 1545 / 0.0 no exine formation 1 (.1) Lus10002568 [exp] 152 / 1e-38 AT5G13390 647 / 0.0 no exine formation 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G161400 [exp] 1074 / 0 AT5G13390 1340 / 0.0 no exine formation 1 (.1) Potri.001G068900 [exp] 1062 / 0 AT5G13390 1331 / 0.0 no exine formation 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002569 pacid=23160139 polypeptide=Lus10002569 locus=Lus10002569.g ID=Lus10002569.BGIv1.0 annot-version=v1.0 ATGCTGTTCATATTATCAAAGACAGTTATATGGGTTTCAGCCATACTTCTACTTGCTGTTTCTCCCCCCCTGCTCCTTTACAAGGACAAGACTAGGACAT CCTCTAAGATGAAACCATGGCAAGGCTATGCTCATTCTAGTGTGATTGCTCTATCAGTTTGGTTCTGCCGTGAAACAATTTTTGAAGCCCTTCAATGGTG GCATGGGAAGTCTCCATCAGATGGTTTGATTTTGGGCTTCTGCGTTGTGTTGACAGGAGTAGCCTGCATCCCGATTGTTGCTCTGCACTTCTCTCATGTC CTGTCTGCCAAGAGATGTCTGGTGCTTGTGTTGGCAACTGGTGTGTTGTTTATTTTAATGCAGCCGCCGATTCCAGTGGCATGGACTTATCGTTCTGAGA TGATTAGGGCAGCCCGCCAATCTTCCGATGACATCTCTATCTATGGCTTTATTGCATCAAAACGTACCTGGCCGTCATGTTTTCTCATTTTGGCAATATT GCTGACATTGGCTGCTGTGACATCTTTTATACCCATTAGGTACATTGTAGAGTTGAGATCGTTTTATTCCATCGTAATGGGAATCACTTTAGGCATATAC ATATCTGCTGAGTACTTTCTCCAAGCTGCAATTCTGCATGTCCTTATTATTGTCACTATGGTCAGCACCTCTGTCTTTGTGGTTTTCACTCATTTCCCAT CTGCTTCAAGCACTAAGCTACTACCATGGGTATTTGCGTCACTTGTAGCCCTTTTCCCTGTAACTTACCTAATGGAGGGTCAGGTAAGAATCAAAAGCAT TCTTGGAGATAGTGTTGTAGGAGAACTGGGAGAGGAAGATAAGAGGCTCACTACTTTACTGGCTGTTGAAGGCGCAAGGACTTCTTTGCTTGGGTTATAT GCAGCAATTTTCATGCTAATAGCTTTGGAGATCAAATTTGAACTTGCATCACTTATGCGGGAGAAGTCGCTTGAAAGGAGAGGAATTCGACATAGTCAAT CTAGTGAAAGCAGTTCTGCTGGTTTTACCCCACGAATGAGGTTCATGCAGCAGCGCAGAGTTTCTACTGTGCCAACCTTCACGATAAAAAGGATGGCTGC TGAGGGTGCATGGATGCCTGCAGTAGGTAATGTTGCTACTGTTATGTGCTTTGCGATATGCCTCATCTTGAATGTCAACCTAACTGGGGGATCCAACCAA GCAATATTCTTCGTGGCTCCCATATTGCTACTTCTCAATCAGGACTCTGACTTTGTTGCTGGTTTTGGAGACAAACAAAGGTATTTCCCTGTTACAGTTG CTATATCGGCTTATTTGGTGCTGACTACCTTATGCAACATCTGGGAAGATGTCTGGCATGGGAATGGTGGATGGAGCATTGAAATTGGTGGTCCTGATTG GTTCTTTGCTGTGAAAAATTTCCTTCCATTGCCATCAGTTACTGGCTTTTATCTGGCTCGATTTTTTACAAAGAAGAGCCTGCAGTCATACTTCGCTTTT GTTGTTCTTGGGAGCTTAATGGTATCTTGGTTTGTAATGCATAACTTCTGGGACCTCAATATATGGCTGGCTGGCATGTCTTTAAAATCTTTTTGCAAGC TGATTGTTGCTAATGCTGTGCTTGCCATGGCGGTCCCTGGTTTAGCGCTTCTCCCTCAGAGTCTCAATTTGTTGGCTGAGGTGGGTTTGACCGGCCATGC ATTGCTGCTGTGCTACATTGAGAACAGATTTTTCAATTACTCGGGGTTATACTACTACGGATTGGAGGATGATGTGATGTATCCGAGCTATATGGTAATT GTTACGACATTCATAGGATTGGCCTTAGTTAGAAGGTTATCTGTTGACCGCCGAATTGGGTCAAAGGCAGTTTGGGTGTTAACTTGCTTGTACTCATCAA AGTTGGCCATGCTGTTCATATTATCAAAGACAGTTATATGGGTTTCAGCCATACTTCTACTTGCTGTTTCTCCCCCCCTGCTCCTTTACAAGGACAAGAC CAGGACATCCTCTAAGATGAAACCATGGCAAGGCTATGCTCATTCTAGTGTGATTGCTCTATCAGTTTGGTTCTGCCGTGAAACAATTTTTGAAGCCCTT CAATGGTGGCATGGGAAGTCTCCATCAGATGGTTTGATTTTGGGCTTCTGCGTTGTGTTGACAGGAGTAGCCTGCATCCCGATTGTTGCTCTGCACTTCT CTCATGTCCTGTCTGCCAAGAGATGTCTGGTGCTTGTGTTGGCAACTGGTGTGTTGTTTATTTTAATGCAGCCGCCGATTCCAGTGGCATGGACTTATCG TTCTGAGATGATTAGGGCAGCCCGCCAATCTTCCGATGACATCTCTATCTATGGCTTTATTGCATCAAAACCTACCTGGCCGTCATGGTTGCTCATTTTG GCAATATTGCTGACATTGGCTGCGGTGACATCTTTTATACCCATTAGGTACATTGTAGAGTTGAGAGCATTTTATTCCATCGTAATGGGAATCACTTTAG GCATATATATATCCGCTGAGTACTTTCTCCAAGCTGCAGTTCTACATGTCCTTATTATTGGCACTATGGTCAGTACCTCTGTCTTTGTGGTTTTCACTCA TTTCCCATCTGCTTCAAGCACTAAGCTACTACCATGGGTATTTGCGTCACTTGTAGCCCTTTTCCCTGTAACTTACCTAATGGAGGGTCAGGTAAGAATC AAAAGCTTTCTTGGAGATAGTGTTGTAGGAGACCTGGGAGAGGAAGATAGGAGGCTGACTACTTTACTGGCTGTTGAAGGCGCAAGGACTTCTTTGCTTG GGTTATATGCAGCAATTTTCATGCTAATAGCTTTGGAGATCAAATTTGAACTTGCATCACTTATGCGGGAGAAGTCACTTGAAAGGAGAGGAATTCGACA TAGTCAATCTAGTGAAAGCAGTTCTGCTGGTTTTACCCCACGAATGAGGTTCATGCAGCAGCGCAGAGTTTCTACTGTGCCAACCTTCACGATAAAAAGG ATGGCTGCTGAGGGTGCATGGATGCCTGCAGTAGGTAATGTTGCTACTGTTATGTGCTTTGCGATATGCCTCATCTTGAATGTCAACCTAACTGGGGGAT CCAACCAAGCAATATTCTTCCTGGCTCCCATTTTGCTACTTCTCAATCAGGACTCTGACTTTGTTGCTGGTTTTGGAGACAAACAAAGGTATTTCCCTGT TACAGTTGCTATATCGGCTTATTTGGTGCTGACTACCTTATGCAACATCTGGGAAGATGTCTGGCATGGGAATGCTGGATGGAGCATTGAAATTGGTGGT CCTGATTGGTTCTTTGCTGTGAAAAATGTGGCACTTCTCATACTTACATTTCCGAGCCACATCCTTTTTAATCGTTTTGTGTGGAGTTACACAAAACAGG CAGATACAACGCCTCTAATACCCTTGCCGCTTAATCTGCCGTCCGTAATAATAGCGGATGTGATAAAGATTAAGATATTGGGTATTTTGGGAATTATTTA TACGATAGCGCAGTCAATGGTTTCTAGACAGCAACATATCTCTGGACTGAAGTATATTTAG
AA sequence Show only first row Show all	>Lus10002569 pacid=23160139 polypeptide=Lus10002569 locus=Lus10002569.g ID=Lus10002569.BGIv1.0 annot-version=v1.0 MLFILSKTVIWVSAILLLAVSPPLLLYKDKTRTSSKMKPWQGYAHSSVIALSVWFCRETIFEALQWWHGKSPSDGLILGFCVVLTGVACIPIVALHFSHV LSAKRCLVLVLATGVLFILMQPPIPVAWTYRSEMIRAARQSSDDISIYGFIASKRTWPSCFLILAILLTLAAVTSFIPIRYIVELRSFYSIVMGITLGIY ISAEYFLQAAILHVLIIVTMVSTSVFVVFTHFPSASSTKLLPWVFASLVALFPVTYLMEGQVRIKSILGDSVVGELGEEDKRLTTLLAVEGARTSLLGLY AAIFMLIALEIKFELASLMREKSLERRGIRHSQSSESSSAGFTPRMRFMQQRRVSTVPTFTIKRMAAEGAWMPAVGNVATVMCFAICLILNVNLTGGSNQ AIFFVAPILLLLNQDSDFVAGFGDKQRYFPVTVAISAYLVLTTLCNIWEDVWHGNGGWSIEIGGPDWFFAVKNFLPLPSVTGFYLARFFTKKSLQSYFAF VVLGSLMVSWFVMHNFWDLNIWLAGMSLKSFCKLIVANAVLAMAVPGLALLPQSLNLLAEVGLTGHALLLCYIENRFFNYSGLYYYGLEDDVMYPSYMVI VTTFIGLALVRRLSVDRRIGSKAVWVLTCLYSSKLAMLFILSKTVIWVSAILLLAVSPPLLLYKDKTRTSSKMKPWQGYAHSSVIALSVWFCRETIFEAL QWWHGKSPSDGLILGFCVVLTGVACIPIVALHFSHVLSAKRCLVLVLATGVLFILMQPPIPVAWTYRSEMIRAARQSSDDISIYGFIASKPTWPSWLLIL AILLTLAAVTSFIPIRYIVELRAFYSIVMGITLGIYISAEYFLQAAVLHVLIIGTMVSTSVFVVFTHFPSASSTKLLPWVFASLVALFPVTYLMEGQVRI KSFLGDSVVGDLGEEDRRLTTLLAVEGARTSLLGLYAAIFMLIALEIKFELASLMREKSLERRGIRHSQSSESSSAGFTPRMRFMQQRRVSTVPTFTIKR MAAEGAWMPAVGNVATVMCFAICLILNVNLTGGSNQAIFFLAPILLLLNQDSDFVAGFGDKQRYFPVTVAISAYLVLTTLCNIWEDVWHGNAGWSIEIGG PDWFFAVKNVALLILTFPSHILFNRFVWSYTKQADTTPLIPLPLNLPSVIIADVIKIKILGILGIIYTIAQSMVSRQQHISGLKYI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10002569 [exp]	0	1
AT3G19870			unknown protein		Lus10030556 [exp]	1.4	0.9233
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10015337 [exp]	3.9	0.9018
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10024393 [exp]	4.0	0.8940
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10015176 [exp]	4.5	0.9053
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024911 [exp]	5.5	0.8995
AT3G19870			unknown protein		Lus10012903 [exp]	6.3	0.9003
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10037140 [exp]	7.7	0.9004
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10001797 [exp]	8.4	0.8963
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10026551 [exp]	8.8	0.8861
AT5G60760			P-loop containing nucleoside t...		Lus10021447 [exp]	9.5	0.8812

Compare expression of checked genes

Lus10002569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.