Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015596 [exp] 43 / 2e-05 ND 41 / 2e-04 Lus10042653 [exp] 42 / 3e-05 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002570 pacid=23160130 polypeptide=Lus10002570 locus=Lus10002570.g ID=Lus10002570.BGIv1.0 annot-version=v1.0 ATGGCGAGCCATTTCGAACACCCTTGCGAGTTCCCGATAGTACCCATTATAGCAATATCCACCCTACAAAGAATGTATGATTATACTATTCAGTGTGATG GTTCGGTGAAAGCCGACATCCACCAGGCGGGATACGGAGTGGTGATGTATAACTCCAATGGATTTGCTATCGATGAGAGGGCAGGACGATTTTTGTGTAA GGAGCCGATTGTCGCAGAAGCTCGTGCACTTCTTGCAGCTTTCCAACTTGCAGCTGCAGACCCTGATCCTTTCCGATTGTGGAGTTTTAGTTTCTGCAAT TCAAGATACACAGTGTCTTTGACCTTGGACTTGTGCATCTACCATTGCAGCAATCACCGAATTATGGAAGGTGCAACTTGGATCGATCTGCAGAATGGTT CCAGGTCTAGACTTGTCGTGGTTGACAGAATAGCCAAACTTGCTAGAGATAACCGGTTACCTGAAGGTTGGATGTATAGCCTGTAG
AA sequence Show only first row Show all	>Lus10002570 pacid=23160130 polypeptide=Lus10002570 locus=Lus10002570.g ID=Lus10002570.BGIv1.0 annot-version=v1.0 MASHFEHPCEFPIVPIIAISTLQRMYDYTIQCDGSVKADIHQAGYGVVMYNSNGFAIDERAGRFLCKEPIVAEARALLAAFQLAAADPDPFRLWSFSFCN SRYTVSLTLDLCIYHCSNHRIMEGATWIDLQNGSRSRLVVVDRIAKLARDNRLPEGWMYSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002570 [exp]	0	1
AT4G03010			RNI-like superfamily protein (...		Lus10033744 [exp]	5.3	0.9676
AT1G47530			MATE efflux family protein (.1...		Lus10016296 [exp]	8.2	0.9008
AT5G60330			unknown protein		Lus10018274 [exp]	9.8	0.9566
AT4G16195			Plant self-incompatibility pro...		Lus10008107 [exp]	11.4	0.9470
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10037726 [exp]	12.2	0.9541
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10016284 [exp]	14.3	0.9538
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021435 [exp]	15.8	0.9529
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	17.1	0.9495
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10012047 [exp]	17.3	0.9497
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10031607 [exp]	19.8	0.9484

Compare expression of checked genes

Lus10002570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.